Wall clock time and date at job start Mon Mar 30 2020 02:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31810 * 119.12033 * 2 1 4 4 C 1.32328 * 120.81385 * 180.02562 * 3 2 1 5 5 C 1.38617 * 119.10367 * 359.97438 * 4 3 2 6 6 C 1.38576 * 118.39965 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.44440 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47041 * 94.99880 * 7 6 5 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47429 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99822 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99769 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47112 * 90.00199 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00310 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99931 * 15 13 11 19 19 N 1.31783 * 119.12421 * 180.30480 * 2 1 3 20 20 H 1.08996 * 109.47372 * 90.00015 * 1 2 3 21 21 H 1.09001 * 109.46524 * 209.99910 * 1 2 3 22 22 H 1.09004 * 109.46998 * 329.99356 * 1 2 3 23 23 H 1.07999 * 120.44593 * 180.02562 * 4 3 2 24 24 H 1.08001 * 120.79985 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.46924 * 334.99791 * 7 6 5 26 26 H 1.08995 * 109.46962 * 214.99945 * 7 6 5 27 27 H 1.00901 * 111.00121 * 56.04537 * 8 7 6 28 28 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 29 29 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 30 30 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 31 31 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 32 32 H 0.97000 * 120.00540 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4712 1.1906 -0.0005 5 6 4.1809 -0.0001 -0.0005 6 6 3.4712 -1.1904 -0.0005 7 6 4.1962 -2.5116 0.0001 8 7 4.3254 -2.9986 1.3799 9 6 5.0282 -4.2880 1.4195 10 6 5.1427 -4.7623 2.8696 11 6 5.8631 -6.0852 2.9101 12 1 6.2055 -6.5419 1.9933 13 6 6.0861 -6.7122 4.1177 14 7 5.6695 -6.1558 5.2341 15 14 6.9797 -8.3517 4.1680 16 1 8.4396 -8.1158 4.3035 17 1 6.4964 -9.1435 5.3275 18 1 6.7135 -9.0993 2.9128 19 7 2.1484 -1.1512 -0.0061 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 3.9907 2.1374 -0.0001 24 1 5.2609 -0.0002 -0.0013 25 1 5.1876 -2.3822 -0.4339 26 1 3.6331 -3.2352 -0.5894 27 1 3.4227 -3.0654 1.8259 28 1 4.4705 -5.0238 0.8400 29 1 6.0254 -4.1714 0.9952 30 1 5.7001 -4.0266 3.4495 31 1 4.1452 -4.8789 3.2935 32 1 5.8260 -6.5969 6.0837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038038025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:09 Heat of formation + Delta-G solvation = 33.590617 kcal Electronic energy + Delta-G solvation = -13973.521065 eV Core-core repulsion = 11547.635644 eV Total energy + Delta-G solvation = -2425.885422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07487 -36.38372 -33.92036 -33.42517 -32.57426 -29.70271 -28.52832 -26.36572 -23.89602 -23.08569 -21.74380 -20.58289 -17.65728 -16.44845 -16.26794 -15.43299 -15.30747 -15.02554 -14.45235 -13.98811 -13.47595 -13.45529 -12.69858 -12.55184 -12.42795 -12.13443 -11.96186 -11.10321 -10.93368 -10.89873 -10.72992 -10.54800 -10.04831 -9.56241 -9.39378 -9.23399 -9.13681 -8.36774 -7.95033 -6.00774 -4.03796 0.88429 1.03061 3.31789 3.37891 3.40958 3.65424 3.86116 4.03397 4.41251 4.46941 4.89250 5.00431 5.06454 5.28301 5.35266 5.36759 5.41094 5.49023 5.69552 5.82564 5.91968 6.25976 6.33428 6.39037 6.91797 7.00701 7.34724 7.68308 7.74626 7.87856 8.04667 8.08211 8.40691 9.03314 9.60150 11.10698 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057461 B = 0.004390 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.166383 B = 6376.108651 C = 6507.750356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.313 3.687 3 N -0.527 5.527 4 C 0.147 3.853 5 C -0.215 4.215 6 C 0.191 3.809 7 C 0.103 3.897 8 N -0.684 5.684 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.517 5.517 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.167 0.833 24 H 0.149 0.851 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.342 0.658 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.014 0.986 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 12.537 -11.390 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.242 5.242 4 C -0.019 4.019 5 C -0.238 4.238 6 C 0.045 3.955 7 C -0.027 4.027 8 N -0.316 5.316 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.232 5.232 20 H 0.101 0.899 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.185 0.815 24 H 0.167 0.833 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.160 0.840 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.311 12.860 -11.084 18.113 hybrid contribution 0.873 -1.438 -0.177 1.692 sum -5.438 11.422 -11.262 16.937 Atomic orbital electron populations 1.20545 0.85872 1.04171 1.03631 1.23229 0.98124 0.83421 0.90608 1.68228 1.10262 1.30523 1.15231 1.23206 0.89671 0.98627 0.90367 1.22763 1.03183 0.93948 1.03892 1.21765 0.89187 0.96216 0.88363 1.20885 0.98610 0.90212 0.92983 1.60698 1.25719 1.31915 1.13254 1.22216 0.96639 0.85783 1.01518 1.19073 0.97328 0.95786 0.89066 1.21156 1.37085 1.05118 0.92769 0.92675 1.25004 0.95831 0.97806 0.95693 1.69973 1.46536 1.38959 0.97751 0.86572 0.79926 0.83777 0.77587 1.20618 1.21208 1.19893 1.68103 1.09865 1.30608 1.14641 0.89863 0.89566 0.89746 0.81549 0.83333 0.89235 0.93281 0.84034 0.96206 0.92029 0.95614 0.96723 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.32 36.01 0.37 -0.44 16 2 C 0.31 4.22 7.64 -157.19 -1.20 3.02 16 3 N -0.53 -6.92 10.34 -10.72 -0.11 -7.03 16 4 C 0.15 1.66 11.31 -17.20 -0.19 1.46 16 5 C -0.22 -2.59 9.84 -39.32 -0.39 -2.98 16 6 C 0.19 2.73 6.34 -82.25 -0.52 2.21 16 7 C 0.10 1.52 6.04 -4.97 -0.03 1.49 16 8 N -0.68 -12.41 6.49 -115.06 -0.75 -13.15 16 9 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 10 C 0.02 0.65 5.23 -27.89 -0.15 0.51 16 11 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 N -0.52 -7.72 10.27 -6.99 -0.07 -7.79 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 24 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 25 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.34 6.39 8.72 -39.29 -0.34 6.04 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -31.94 282.24 -8.03 -39.97 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.53 Total: 0.37 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.54 Total: -6.94 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.19 Total: -54.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.94 -8.03 -39.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038038025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.561 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds