Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31810 * 119.12033 * 2 1 4 4 C 1.32328 * 120.81385 * 180.02562 * 3 2 1 5 5 C 1.38617 * 119.10367 * 359.97438 * 4 3 2 6 6 C 1.38576 * 118.39965 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.44440 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47041 * 94.99880 * 7 6 5 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47429 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99822 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99769 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47112 * 90.00199 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00310 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99931 * 15 13 11 19 19 N 1.31783 * 119.12421 * 180.30480 * 2 1 3 20 20 H 1.08996 * 109.47372 * 90.00015 * 1 2 3 21 21 H 1.09001 * 109.46524 * 209.99910 * 1 2 3 22 22 H 1.09004 * 109.46998 * 329.99356 * 1 2 3 23 23 H 1.07999 * 120.44593 * 180.02562 * 4 3 2 24 24 H 1.08001 * 120.79985 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.46924 * 334.99791 * 7 6 5 26 26 H 1.08995 * 109.46962 * 214.99945 * 7 6 5 27 27 H 1.00901 * 111.00121 * 56.04537 * 8 7 6 28 28 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 29 29 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 30 30 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 31 31 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 32 32 H 0.97000 * 120.00540 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4712 1.1906 -0.0005 5 6 4.1809 -0.0001 -0.0005 6 6 3.4712 -1.1904 -0.0005 7 6 4.1962 -2.5116 0.0001 8 7 4.3254 -2.9986 1.3799 9 6 5.0282 -4.2880 1.4195 10 6 5.1427 -4.7623 2.8696 11 6 5.8631 -6.0852 2.9101 12 1 6.2055 -6.5419 1.9933 13 6 6.0861 -6.7122 4.1177 14 7 5.6695 -6.1558 5.2341 15 14 6.9797 -8.3517 4.1680 16 1 8.4396 -8.1158 4.3035 17 1 6.4964 -9.1435 5.3275 18 1 6.7135 -9.0993 2.9128 19 7 2.1484 -1.1512 -0.0061 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 3.9907 2.1374 -0.0001 24 1 5.2609 -0.0002 -0.0013 25 1 5.1876 -2.3822 -0.4339 26 1 3.6331 -3.2352 -0.5894 27 1 3.4227 -3.0654 1.8259 28 1 4.4705 -5.0238 0.8400 29 1 6.0254 -4.1714 0.9952 30 1 5.7001 -4.0266 3.4495 31 1 4.1452 -4.8789 3.2935 32 1 5.8260 -6.5969 6.0837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038038025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = 11.272223 kcal Electronic energy + Delta-G solvation = -13974.488864 eV Core-core repulsion = 11547.635644 eV Total energy + Delta-G solvation = -2426.853220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03940 -37.81587 -35.48942 -34.49144 -34.14080 -31.43982 -29.45411 -27.84984 -25.60287 -24.13819 -22.84354 -22.43630 -18.65000 -18.51257 -17.43349 -16.71664 -16.43510 -16.34360 -16.06509 -15.38163 -14.94026 -14.40885 -14.21290 -13.82996 -13.56635 -13.43755 -13.21076 -12.88645 -12.81222 -12.44755 -11.99849 -11.84038 -11.76653 -11.44152 -11.28558 -10.56943 -10.36777 -10.25632 -9.42179 -8.20440 -6.32329 -0.08557 0.07222 1.41557 1.43209 1.54214 2.40655 2.66106 2.93008 3.13434 3.14029 3.44363 3.57632 4.01414 4.16917 4.32430 4.48918 4.50775 4.57919 4.62434 4.64033 4.70304 4.98080 5.04301 5.06045 5.42315 5.48767 5.63735 5.75004 6.03190 6.06083 6.18556 6.35381 6.84996 7.11035 7.37372 8.91962 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057461 B = 0.004390 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.166383 B = 6376.108651 C = 6507.750356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.297 3.703 3 N -0.539 5.539 4 C 0.148 3.852 5 C -0.215 4.215 6 C 0.169 3.831 7 C 0.108 3.892 8 N -0.688 5.688 9 C 0.085 3.915 10 C 0.030 3.970 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.969 3.031 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.262 1.262 19 N -0.542 5.542 20 H 0.098 0.902 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.206 0.794 24 H 0.172 0.828 25 H 0.110 0.890 26 H 0.048 0.952 27 H 0.336 0.664 28 H 0.023 0.977 29 H 0.071 0.929 30 H -0.004 1.004 31 H -0.013 1.013 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 12.800 -12.579 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 N -0.254 5.254 4 C -0.017 4.017 5 C -0.237 4.237 6 C 0.023 3.977 7 C -0.021 4.021 8 N -0.319 5.319 9 C -0.044 4.044 10 C -0.007 4.007 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.793 3.207 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.186 1.186 19 N -0.259 5.259 20 H 0.117 0.883 21 H 0.103 0.897 22 H 0.114 0.886 23 H 0.222 0.778 24 H 0.190 0.810 25 H 0.128 0.872 26 H 0.066 0.934 27 H 0.153 0.847 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.014 0.986 31 H 0.005 0.995 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.592 13.131 -12.297 18.839 hybrid contribution 0.620 -1.420 0.186 1.561 sum -4.971 11.711 -12.111 17.565 Atomic orbital electron populations 1.20640 0.83910 1.04664 1.04757 1.23837 0.99547 0.83240 0.90393 1.68324 1.11274 1.30296 1.15537 1.23881 0.89235 0.99985 0.88627 1.23037 1.04363 0.93336 1.02921 1.21781 0.89428 0.96643 0.89880 1.20904 0.99931 0.90596 0.90683 1.60597 1.25304 1.30200 1.15821 1.21839 0.97662 0.87139 0.97727 1.18931 0.94979 0.94779 0.92038 1.21611 1.37250 1.06043 0.93334 0.91768 1.25998 0.96592 1.01995 0.95210 1.70116 1.47852 1.40909 0.98489 0.85393 0.78676 0.78635 0.78000 1.19634 1.20875 1.18588 1.68087 1.10466 1.31627 1.15681 0.88330 0.89657 0.88598 0.77759 0.81043 0.87213 0.93418 0.84734 0.95901 0.91041 0.98605 0.99455 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.32 71.24 0.74 -0.78 16 2 C 0.30 7.73 7.64 138.75 1.06 8.80 16 3 N -0.54 -13.28 10.34 -187.83 -1.94 -15.22 16 4 C 0.15 2.99 11.31 84.71 0.96 3.95 16 5 C -0.21 -4.72 9.84 22.44 0.22 -4.50 16 6 C 0.17 4.65 6.34 42.56 0.27 4.92 16 7 C 0.11 3.07 6.04 85.56 0.52 3.58 16 8 N -0.69 -24.86 6.49 -517.93 -3.36 -28.22 16 9 C 0.08 3.52 5.62 86.30 0.49 4.00 16 10 C 0.03 1.62 5.23 29.84 0.16 1.78 16 11 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 0.00 5.46 84.65 0.46 0.46 16 14 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 15 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 N -0.54 -15.97 10.27 -176.02 -1.81 -17.78 16 20 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 24 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 25 H 0.11 2.63 8.06 -2.39 -0.02 2.61 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.34 12.80 8.72 -89.69 -0.78 12.01 16 28 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -68.97 282.24 0.62 -68.35 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.32 Total: 12.43 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.10 Total: -8.57 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -6.83 Total: -118.40 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.97 0.62 -68.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038038025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.619 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds