Wall clock time and date at job start Mon Mar 30 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46948 * 2 1 4 4 N 1.46498 * 109.47693 * 119.99781 * 2 1 3 5 5 C 1.46506 * 119.99928 * 305.54531 * 4 2 1 6 6 C 1.50700 * 109.46986 * 89.99236 * 5 4 2 7 7 H 1.07996 * 120.00038 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99662 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00214 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99824 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46745 * 90.00721 * 10 8 6 12 12 H 1.48504 * 109.46811 * 210.00266 * 10 8 6 13 13 H 1.48499 * 109.47097 * 330.00475 * 10 8 6 14 14 C 1.38538 * 120.00369 * 125.53930 * 4 2 1 15 15 C 1.39665 * 120.52722 * 10.80446 * 14 4 2 16 16 C 1.38079 * 118.33038 * 180.02562 * 15 14 4 17 17 N 1.32578 * 119.19815 * 0.02562 * 16 15 14 18 18 C 1.31756 * 121.01382 * 359.97438 * 17 16 15 19 19 N 1.31778 * 121.83549 * 359.71719 * 18 17 16 20 20 H 1.09001 * 109.47590 * 60.00370 * 1 2 3 21 21 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47037 * 299.99562 * 1 2 3 23 23 H 1.09003 * 109.47039 * 239.99698 * 2 1 3 24 24 H 1.08994 * 109.47271 * 60.00037 * 3 2 1 25 25 H 1.09000 * 109.47196 * 180.02562 * 3 2 1 26 26 H 1.09010 * 109.46801 * 300.00047 * 3 2 1 27 27 H 1.08993 * 109.47182 * 209.99864 * 5 4 2 28 28 H 1.09001 * 109.46939 * 329.99698 * 5 4 2 29 29 H 0.97001 * 120.00792 * 179.97438 * 9 8 6 30 30 H 1.07995 * 120.84125 * 0.02758 * 15 14 4 31 31 H 1.07997 * 120.39968 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.08268 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.5673 -0.2647 2.5234 6 6 0.3226 -1.0266 2.8992 7 1 -0.0908 -1.7554 2.2178 8 6 -0.2878 -0.7940 4.1134 9 7 0.2158 0.0932 4.9434 10 14 -1.8303 -1.7389 4.5797 11 1 -1.4507 -2.9861 5.2906 12 1 -2.6750 -0.9004 5.4678 13 1 -2.5913 -2.0813 3.3513 14 6 2.9069 -1.7463 1.0723 15 6 3.5174 -2.0196 -0.1537 16 6 4.3950 -3.0832 -0.2260 17 7 4.6275 -3.8050 0.8615 18 6 4.0353 -3.5214 2.0039 19 7 3.1957 -2.5125 2.1199 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8901 27 1 2.3503 -0.4644 3.2547 28 1 1.3487 0.8031 2.5075 29 1 -0.2137 0.2572 5.7975 30 1 3.3085 -1.4143 -1.0234 31 1 4.8861 -3.3241 -1.1572 32 1 4.2478 -4.1299 2.8705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:12 Heat of formation + Delta-G solvation = 52.093425 kcal Electronic energy + Delta-G solvation = -15183.531834 eV Core-core repulsion = 12758.448755 eV Total energy + Delta-G solvation = -2425.083080 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22394 -37.33060 -33.14994 -32.76768 -31.54341 -29.99265 -27.08825 -26.63545 -23.94889 -23.24943 -22.06967 -19.59639 -17.32167 -16.69708 -16.37767 -15.00120 -14.71024 -14.52994 -14.25501 -13.74983 -13.20759 -13.05733 -12.78003 -12.30767 -11.76176 -11.63431 -11.31229 -11.18792 -10.85832 -10.71750 -10.41559 -10.35637 -10.11990 -9.74438 -9.52600 -9.21481 -8.43343 -8.39780 -7.09609 -6.01791 -4.05725 1.67274 2.05846 3.30598 3.37014 3.38980 3.65171 4.43894 4.58306 4.81348 5.00838 5.18889 5.31136 5.38277 5.49668 5.54605 5.77480 5.95850 6.03189 6.10281 6.15882 6.21686 6.33666 6.57637 6.78500 6.96602 7.09792 7.41678 7.59625 7.86876 8.12690 8.23918 8.27417 8.94267 9.03406 9.57387 11.04785 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.010429 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.736510 B = 2684.064424 C = 3362.650295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 C -0.162 4.162 4 N -0.570 5.570 5 C 0.254 3.746 6 C -0.511 4.511 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.446 3.554 15 C -0.315 4.315 16 C 0.164 3.836 17 N -0.588 5.588 18 C 0.329 3.671 19 N -0.552 5.552 20 H 0.050 0.950 21 H 0.056 0.944 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -0.346 -10.224 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 C -0.220 4.220 4 N -0.278 5.278 5 C 0.135 3.865 6 C -0.550 4.550 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.201 3.799 15 C -0.345 4.345 16 C 0.002 3.998 17 N -0.309 5.309 18 C 0.038 3.962 19 N -0.275 5.275 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.969 -0.572 -9.233 10.067 hybrid contribution -1.127 -0.021 -0.305 1.167 sum 2.842 -0.593 -9.538 9.970 Atomic orbital electron populations 1.22120 0.94247 1.02626 1.02240 1.21004 0.95050 0.92543 0.87445 1.22187 1.00960 0.96454 1.02426 1.47313 1.42439 1.29148 1.08917 1.19283 0.95572 0.94937 0.76740 1.21382 1.09520 1.21986 1.02116 0.92585 1.24895 0.97646 0.95365 0.96166 1.69919 1.40380 1.33781 1.09533 0.86573 0.82976 0.79937 0.78355 1.20644 1.21303 1.20094 1.18652 0.86259 0.86292 0.88684 1.22117 1.07292 1.05719 0.99328 1.22606 0.91599 0.89032 0.96513 1.68332 1.29486 1.32665 1.00459 1.24615 0.86528 0.90398 0.94625 1.68224 1.19358 1.07805 1.32149 0.93082 0.92537 0.90123 0.90528 0.91467 0.92879 0.92098 0.93935 0.95008 0.92846 0.85000 0.83093 0.79859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.35 37.16 0.31 -2.29 16 2 C 0.14 2.39 3.11 -67.93 -0.21 2.18 16 3 C -0.16 -2.37 9.26 37.16 0.34 -2.02 16 4 N -0.57 -11.86 2.49 -167.44 -0.42 -12.28 16 5 C 0.25 6.33 4.41 -5.19 -0.02 6.31 16 6 C -0.51 -13.82 7.85 -34.44 -0.27 -14.09 16 7 H 0.06 1.55 7.53 -52.49 -0.40 1.16 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.45 9.16 7.34 -154.79 -1.14 8.03 16 15 C -0.32 -5.26 9.30 -39.11 -0.36 -5.62 16 16 C 0.16 2.56 11.29 -17.29 -0.20 2.36 16 17 N -0.59 -10.33 10.43 -14.67 -0.15 -10.49 16 18 C 0.33 6.13 12.28 -92.20 -1.13 5.00 16 19 N -0.55 -12.10 9.41 -13.81 -0.13 -12.23 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.06 1.03 7.97 -51.93 -0.41 0.61 16 22 H 0.08 1.58 6.94 -51.93 -0.36 1.22 16 23 H 0.08 1.11 5.58 -51.93 -0.29 0.82 16 24 H 0.07 1.10 6.89 -51.93 -0.36 0.74 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 27 H 0.04 1.19 7.58 -51.93 -0.39 0.80 16 28 H 0.03 0.82 6.71 -51.93 -0.35 0.47 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.13 1.84 6.10 -52.49 -0.32 1.52 16 31 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.18 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -30.47 269.26 -7.83 -38.30 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.13 Total: -0.17 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.77 Total: 1.44 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.04 Total: -60.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.47 -7.83 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.389 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds