Wall clock time and date at job start Mon Mar 30 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.46498 * 120.00313 * 300.00170 * 4 2 1 6 6 C 1.50702 * 109.47200 * 89.99842 * 5 4 2 7 7 H 1.08006 * 119.99554 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99900 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99775 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47140 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47057 * 119.99677 * 10 8 6 13 13 H 1.48494 * 109.46827 * 239.99579 * 10 8 6 14 14 C 1.38413 * 119.99682 * 120.00382 * 4 2 1 15 15 N 1.32498 * 119.21475 * 359.72863 * 14 4 2 16 16 C 1.32271 * 120.73400 * 179.72003 * 15 14 4 17 17 C 1.38606 * 119.20064 * 0.54456 * 16 15 14 18 18 C 1.38608 * 118.55847 * 359.73083 * 17 16 15 19 19 N 1.32281 * 119.19404 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 21 21 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 24 24 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 26 26 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 27 27 H 1.08995 * 109.46810 * 210.00303 * 5 4 2 28 28 H 1.09005 * 109.46841 * 330.00094 * 5 4 2 29 29 H 0.97004 * 119.99676 * 180.02562 * 9 8 6 30 30 H 1.07998 * 120.40245 * 180.30062 * 16 15 14 31 31 H 1.07997 * 120.72589 * 179.75183 * 17 16 15 32 32 H 1.07996 * 120.40115 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.6644 -0.1900 2.5268 6 6 0.3830 -0.8387 2.9831 7 1 -0.1175 -1.5527 2.3458 8 6 -0.1505 -0.5206 4.2140 9 7 0.4593 0.3486 4.9902 10 14 -1.7386 -1.3252 4.7798 11 1 -2.2213 -2.2590 3.7311 12 1 -1.4923 -2.0765 6.0370 13 1 -2.7647 -0.2793 5.0212 14 6 2.8142 -1.8159 1.0693 15 7 3.1203 -2.2582 -0.1416 16 6 3.8830 -3.3275 -0.2978 17 6 4.3533 -3.9924 0.8238 18 6 4.0093 -3.5060 2.0753 19 7 3.2476 -2.4279 2.1615 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 2.4629 -0.4291 3.2291 28 1 1.5295 0.8908 2.4843 29 1 0.0841 0.5721 5.8563 30 1 4.1332 -3.6805 -1.2873 31 1 4.9745 -4.8703 0.7248 32 1 4.3596 -4.0006 2.9691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:21 Heat of formation + Delta-G solvation = 57.132141 kcal Electronic energy + Delta-G solvation = -15198.695795 eV Core-core repulsion = 12773.831210 eV Total energy + Delta-G solvation = -2424.864584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20327 -36.97955 -33.14957 -32.61860 -32.03461 -29.60274 -26.96027 -26.55991 -24.01987 -23.14023 -22.04075 -19.44665 -17.14535 -16.70850 -16.33007 -15.15309 -14.57348 -14.40528 -14.18831 -13.70881 -12.98629 -12.87572 -12.82841 -12.26177 -11.65516 -11.49848 -11.21469 -11.00516 -10.77056 -10.58792 -10.37489 -10.17762 -10.10153 -9.94631 -9.73494 -9.17436 -8.43422 -8.27383 -6.97980 -5.99583 -4.03873 1.83666 1.87365 3.29950 3.37720 3.41675 3.62839 4.44949 4.62465 4.83324 5.14620 5.32016 5.38510 5.56820 5.69721 5.73644 5.81353 5.91133 6.15707 6.21721 6.36439 6.40378 6.47381 6.70649 6.87351 7.09434 7.16631 7.48671 7.67160 7.87468 7.99066 8.28446 8.42324 8.94463 9.13792 9.59474 11.06509 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024643 B = 0.010499 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.956606 B = 2666.246111 C = 3298.998177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 C -0.159 4.159 4 N -0.555 5.555 5 C 0.254 3.746 6 C -0.513 4.513 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.570 3.430 15 N -0.588 5.588 16 C 0.185 3.815 17 C -0.326 4.326 18 C 0.190 3.810 19 N -0.547 5.547 20 H 0.077 0.923 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -3.690 -9.034 11.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 C -0.217 4.217 4 N -0.266 5.266 5 C 0.135 3.865 6 C -0.552 4.552 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.215 3.785 15 N -0.312 5.312 16 C 0.016 3.984 17 C -0.353 4.353 18 C 0.019 3.981 19 N -0.268 5.268 20 H 0.096 0.904 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.315 -2.508 -8.718 10.045 hybrid contribution -0.345 -1.346 0.417 1.451 sum 3.970 -3.854 -8.300 9.976 Atomic orbital electron populations 1.22131 0.95022 1.02120 1.01965 1.20925 0.94302 0.92245 0.88228 1.22155 1.00794 0.96663 1.02135 1.47031 1.47205 1.23396 1.08979 1.19339 0.96521 0.94281 0.76374 1.21467 1.07360 1.24523 1.01889 0.92548 1.24892 0.97514 0.95298 0.96356 1.69940 1.39403 1.33481 1.10662 0.86519 0.83428 0.79259 0.78673 1.19954 1.20997 1.21060 1.19449 0.87399 0.87568 0.84058 1.67884 1.20528 1.17383 1.25418 1.22678 0.88539 0.88510 0.98690 1.22255 1.11457 1.06432 0.95193 1.22888 0.88533 0.89581 0.97086 1.68152 1.15580 1.11230 1.31886 0.90403 0.93249 0.92990 0.89019 0.93147 0.92246 0.91633 0.93421 0.94721 0.92909 0.82925 0.85208 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.47 37.16 0.31 -2.54 16 2 C 0.15 2.80 3.27 -67.92 -0.22 2.57 16 3 C -0.16 -2.66 9.17 37.16 0.34 -2.32 16 4 N -0.56 -12.50 2.49 -169.79 -0.42 -12.92 16 5 C 0.25 6.57 4.60 -5.19 -0.02 6.55 16 6 C -0.51 -14.23 7.83 -34.44 -0.27 -14.50 16 7 H 0.06 1.61 7.63 -52.48 -0.40 1.21 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.57 12.60 8.17 -322.80 -2.64 9.96 16 15 N -0.59 -11.36 8.85 -13.93 -0.12 -11.49 16 16 C 0.18 2.86 11.30 -17.23 -0.19 2.66 16 17 C -0.33 -4.75 10.16 -39.31 -0.40 -5.15 16 18 C 0.19 3.28 11.30 -17.22 -0.19 3.08 16 19 N -0.55 -12.13 9.11 -13.93 -0.13 -12.26 16 20 H 0.08 1.62 6.92 -51.93 -0.36 1.26 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.09 1.69 6.76 -51.93 -0.35 1.34 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.18 6.66 -51.93 -0.35 0.84 16 27 H 0.05 1.36 7.33 -51.93 -0.38 0.98 16 28 H 0.03 0.92 6.43 -51.93 -0.33 0.59 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 271.12 15.07 4.09 4.09 Total: -1.00 -31.12 271.12 -8.52 -39.64 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.27 Total: -0.37 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.39 Total: 1.93 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.06 Total: -62.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.12 -8.52 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.771 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds