Wall clock time and date at job start Mon Mar 30 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.46498 * 120.00313 * 300.00170 * 4 2 1 6 6 C 1.50702 * 109.47200 * 89.99842 * 5 4 2 7 7 H 1.08006 * 119.99554 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99900 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99775 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47140 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47057 * 119.99677 * 10 8 6 13 13 H 1.48494 * 109.46827 * 239.99579 * 10 8 6 14 14 C 1.38413 * 119.99682 * 120.00382 * 4 2 1 15 15 N 1.32498 * 119.21475 * 359.72863 * 14 4 2 16 16 C 1.32271 * 120.73400 * 179.72003 * 15 14 4 17 17 C 1.38606 * 119.20064 * 0.54456 * 16 15 14 18 18 C 1.38608 * 118.55847 * 359.73083 * 17 16 15 19 19 N 1.32281 * 119.19404 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 21 21 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 24 24 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 26 26 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 27 27 H 1.08995 * 109.46810 * 210.00303 * 5 4 2 28 28 H 1.09005 * 109.46841 * 330.00094 * 5 4 2 29 29 H 0.97004 * 119.99676 * 180.02562 * 9 8 6 30 30 H 1.07998 * 120.40245 * 180.30062 * 16 15 14 31 31 H 1.07997 * 120.72589 * 179.75183 * 17 16 15 32 32 H 1.07996 * 120.40115 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.6644 -0.1900 2.5268 6 6 0.3830 -0.8387 2.9831 7 1 -0.1175 -1.5527 2.3458 8 6 -0.1505 -0.5206 4.2140 9 7 0.4593 0.3486 4.9902 10 14 -1.7386 -1.3252 4.7798 11 1 -2.2213 -2.2590 3.7311 12 1 -1.4923 -2.0765 6.0370 13 1 -2.7647 -0.2793 5.0212 14 6 2.8142 -1.8159 1.0693 15 7 3.1203 -2.2582 -0.1416 16 6 3.8830 -3.3275 -0.2978 17 6 4.3533 -3.9924 0.8238 18 6 4.0093 -3.5060 2.0753 19 7 3.2476 -2.4279 2.1615 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 2.4629 -0.4291 3.2291 28 1 1.5295 0.8908 2.4843 29 1 0.0841 0.5721 5.8563 30 1 4.1332 -3.6805 -1.2873 31 1 4.9745 -4.8703 0.7248 32 1 4.3596 -4.0006 2.9691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:21 Heat of formation + Delta-G solvation = 39.719575 kcal Electronic energy + Delta-G solvation = -15199.450860 eV Core-core repulsion = 12773.831210 eV Total energy + Delta-G solvation = -2425.619650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63318 -38.54953 -34.95772 -34.33491 -33.47825 -31.24104 -28.81821 -28.00043 -25.58977 -24.78137 -23.63862 -20.96983 -18.74412 -18.50410 -18.08800 -16.56516 -16.38610 -15.96606 -15.54274 -15.29816 -14.56441 -14.52037 -14.10543 -14.02983 -13.30020 -13.18651 -12.92299 -12.79169 -12.54312 -12.34384 -12.12928 -11.71157 -11.63710 -11.56197 -11.40226 -10.86698 -10.57695 -9.74621 -8.62919 -8.08740 -6.26054 0.47559 0.54254 1.35835 1.37216 1.48709 2.08511 2.41511 3.13700 3.20169 3.54649 3.82952 4.03850 4.13728 4.30089 4.46720 4.61078 4.62209 4.79361 4.82330 4.95628 5.00774 5.07584 5.17896 5.22414 5.43692 5.50685 5.68714 5.76645 6.12339 6.22165 6.33054 6.76764 6.89670 7.39170 7.65504 8.91341 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024643 B = 0.010499 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.956606 B = 2666.246111 C = 3298.998177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.144 3.856 3 C -0.150 4.150 4 N -0.573 5.573 5 C 0.280 3.720 6 C -0.515 4.515 7 H 0.043 0.957 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.957 3.043 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.273 1.273 14 C 0.545 3.455 15 N -0.597 5.597 16 C 0.177 3.823 17 C -0.298 4.298 18 C 0.168 3.832 19 N -0.601 5.601 20 H 0.047 0.953 21 H 0.087 0.913 22 H 0.033 0.967 23 H 0.101 0.899 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.043 0.957 27 H 0.011 0.989 28 H 0.019 0.981 29 H 0.264 0.736 30 H 0.202 0.798 31 H 0.178 0.822 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -5.220 -10.707 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.041 3.959 3 C -0.208 4.208 4 N -0.286 5.286 5 C 0.158 3.842 6 C -0.554 4.554 7 H 0.061 0.939 8 C -0.187 4.187 9 N -0.568 5.568 10 Si 0.783 3.217 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.199 1.199 14 C 0.190 3.810 15 N -0.321 5.321 16 C 0.010 3.990 17 C -0.324 4.324 18 C 0.001 3.999 19 N -0.324 5.324 20 H 0.066 0.934 21 H 0.106 0.894 22 H 0.052 0.948 23 H 0.119 0.881 24 H 0.066 0.934 25 H 0.113 0.887 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.218 0.782 31 H 0.195 0.805 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.688 -4.089 -10.417 12.133 hybrid contribution -0.301 -1.012 0.856 1.359 sum 4.387 -5.101 -9.561 11.691 Atomic orbital electron populations 1.22036 0.94981 1.00940 1.02303 1.21133 0.94338 0.93179 0.87273 1.22079 1.00564 0.95424 1.02731 1.46874 1.48807 1.24656 1.08297 1.18684 0.94434 0.93116 0.77927 1.21578 1.07936 1.24041 1.01872 0.93916 1.25675 1.00693 0.95861 0.96476 1.70047 1.40959 1.34680 1.11077 0.85527 0.79743 0.78473 0.77995 1.19905 1.20596 1.19878 1.19616 0.88288 0.87940 0.85144 1.67919 1.21426 1.18847 1.23927 1.23594 0.87053 0.87150 1.01244 1.22739 1.09530 1.06587 0.93524 1.23507 0.88054 0.88709 0.99675 1.68088 1.17746 1.13478 1.33063 0.93351 0.89445 0.94827 0.88070 0.93386 0.88707 0.93801 0.97077 0.96291 0.92661 0.78174 0.80461 0.80198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.47 71.98 0.61 -4.75 16 2 C 0.14 5.47 3.27 44.99 0.15 5.62 16 3 C -0.15 -4.96 9.17 71.98 0.66 -4.30 16 4 N -0.57 -26.63 2.49 -691.09 -1.72 -28.34 16 5 C 0.28 15.22 4.60 85.63 0.39 15.62 16 6 C -0.52 -29.63 7.83 25.60 0.20 -29.43 16 7 H 0.04 2.52 7.63 -2.91 -0.02 2.50 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.93 -55.70 13.29 21.44 0.28 -55.42 16 10 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 C 0.55 24.37 8.17 261.48 2.14 26.51 16 15 N -0.60 -22.25 8.85 -197.99 -1.75 -24.00 16 16 C 0.18 4.87 11.30 84.71 0.96 5.82 16 17 C -0.30 -7.58 10.16 22.45 0.23 -7.35 16 18 C 0.17 5.58 11.30 84.71 0.96 6.53 16 19 N -0.60 -27.09 9.11 -197.98 -1.80 -28.89 16 20 H 0.05 2.06 6.92 -2.39 -0.02 2.04 16 21 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 22 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.10 3.63 6.76 -2.39 -0.02 3.61 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.04 1.62 6.66 -2.39 -0.02 1.61 16 27 H 0.01 0.68 7.33 -2.39 -0.02 0.66 16 28 H 0.02 1.08 6.43 -2.38 -0.02 1.06 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.20 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.18 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -70.58 271.12 4.89 -65.69 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.10 Total: 8.07 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.75 Total: 15.39 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -4.99 Total: -136.66 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.58 4.89 -65.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.407 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds