Wall clock time and date at job start Mon Mar 30 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46970 * 111.00044 * 300.23875 * 12 2 1 14 14 C 1.53413 * 109.66217 * 165.12716 * 13 12 2 15 15 N 1.46524 * 108.23162 * 49.67255 * 14 13 12 16 16 C 1.36037 * 128.66861 * 163.55851 * 15 14 13 17 17 C 1.34936 * 106.64263 * 180.18589 * 16 15 14 18 18 N 1.34365 * 108.09145 * 359.96635 * 17 16 15 19 19 C 1.29885 * 109.20212 * 359.94218 * 18 17 16 20 20 C 1.47321 * 110.99823 * 176.04465 * 12 2 1 21 21 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 23 23 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 24 24 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.44389 * 285.18043 * 13 12 2 26 26 H 1.08999 * 109.44320 * 45.07136 * 13 12 2 27 27 H 1.08995 * 109.70215 * 289.98973 * 14 13 12 28 28 H 1.08997 * 109.74912 * 169.37948 * 14 13 12 29 29 H 1.08004 * 126.67991 * 0.18643 * 16 15 14 30 30 H 1.08003 * 125.95111 * 179.97438 * 17 16 15 31 31 H 1.09001 * 109.74247 * 293.92890 * 20 12 2 32 32 H 1.08997 * 109.73719 * 54.63587 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 7 2.0196 -0.6925 1.1995 13 6 1.5437 -0.0292 2.4217 14 6 1.7465 -0.9583 3.6256 15 7 3.1257 -1.4522 3.5963 16 6 3.8392 -2.0404 4.5940 17 6 5.0592 -2.3145 4.0867 18 7 5.0822 -1.9010 2.8085 19 6 3.9292 -1.3853 2.5056 20 6 3.4892 -0.7948 1.1871 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 0.7043 1.1577 -3.4845 25 1 2.1046 0.8924 2.5763 26 1 0.4841 0.2046 2.3185 27 1 1.0540 -1.7976 3.5628 28 1 1.5730 -0.4069 4.5496 29 1 3.4961 -2.2478 5.5968 30 1 5.8750 -2.7845 4.6160 31 1 3.8063 -1.4424 0.3697 32 1 3.9262 0.1960 1.0634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060394334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:57 Heat of formation + Delta-G solvation = 56.942596 kcal Electronic energy + Delta-G solvation = -15261.992582 eV Core-core repulsion = 12837.119778 eV Total energy + Delta-G solvation = -2424.872804 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.16480 -39.07029 -35.68379 -34.35986 -32.15190 -30.60103 -29.52549 -27.33025 -25.68759 -24.26992 -22.36889 -21.47635 -19.93424 -18.58265 -17.85970 -17.09536 -16.89123 -15.96723 -15.70394 -15.20328 -14.86922 -14.68111 -14.24338 -14.20378 -13.59807 -13.23764 -12.94614 -12.73328 -12.62621 -12.39666 -12.15237 -12.13715 -11.74305 -11.03699 -10.86270 -10.58887 -10.49762 -9.35128 -9.05760 -8.14028 -6.25496 1.15548 1.43352 1.43859 1.51682 1.93205 2.18561 2.41394 2.93997 3.16743 3.54296 3.68677 3.93840 4.17271 4.29029 4.43505 4.57227 4.59019 4.64718 4.76343 4.87791 4.90129 5.01136 5.13467 5.38454 5.48138 5.67089 5.70623 5.90153 6.15761 6.20668 6.27661 6.57048 6.85488 7.20676 7.43800 8.91401 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039907 B = 0.008287 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.454494 B = 3377.895428 C = 3942.641797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.220 3.780 3 H -0.028 1.028 4 C -0.526 4.526 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.539 5.539 13 C 0.026 3.974 14 C 0.114 3.886 15 N -0.452 5.452 16 C -0.040 4.040 17 C -0.064 4.064 18 N -0.529 5.529 19 C 0.188 3.812 20 C 0.159 3.841 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.063 0.937 24 H 0.263 0.737 25 H 0.031 0.969 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.219 0.781 30 H 0.192 0.808 31 H 0.085 0.915 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.034 -2.617 13.799 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 H -0.010 1.010 4 C -0.565 4.565 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.264 5.264 13 C -0.102 4.102 14 C -0.007 4.007 15 N -0.135 5.135 16 C -0.174 4.174 17 C -0.211 4.211 18 N -0.249 5.249 19 C -0.075 4.075 20 C 0.029 3.971 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.147 0.853 29 H 0.235 0.765 30 H 0.209 0.791 31 H 0.103 0.897 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.175 -2.978 13.149 13.484 hybrid contribution 0.100 0.594 -0.643 0.881 sum 0.275 -2.384 12.507 12.735 Atomic orbital electron populations 1.21689 0.96147 0.99689 1.00428 1.19079 0.93319 0.90264 0.86000 1.01038 1.21358 1.31405 1.12598 0.91109 0.92736 1.25598 0.95238 0.95643 1.01600 1.69975 1.37242 1.23997 1.24265 0.85670 0.78686 0.78789 0.78871 1.19817 1.20646 1.20038 1.62216 1.07643 1.53349 1.03236 1.22627 1.03232 0.94707 0.89621 1.22337 0.78964 0.99341 1.00082 1.45639 1.13374 1.44191 1.10253 1.23180 0.93325 1.04542 0.96319 1.22921 0.99057 1.08005 0.91143 1.69858 1.21364 1.16864 1.16818 1.23273 0.87757 1.04820 0.91622 1.20224 0.88620 0.98145 0.90107 0.94729 0.93924 0.91849 0.92750 0.95106 0.86853 0.88198 0.85294 0.76452 0.79075 0.89667 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.78 71.98 0.63 -4.88 16 2 C 0.22 10.76 2.06 44.17 0.09 10.85 16 3 H -0.03 -1.52 8.14 -2.39 -0.02 -1.53 16 4 C -0.53 -28.69 7.99 25.60 0.20 -28.48 16 5 H 0.05 3.02 6.41 -2.92 -0.02 3.00 16 6 C 0.02 1.02 5.31 84.66 0.45 1.47 16 7 N -0.92 -51.42 11.31 21.45 0.24 -51.18 16 8 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.54 -22.41 4.52 -877.13 -3.96 -26.37 16 13 C 0.03 0.83 5.40 86.43 0.47 1.30 16 14 C 0.11 2.74 7.25 86.51 0.63 3.36 16 15 N -0.45 -13.69 3.14 -513.62 -1.61 -15.30 16 16 C -0.04 -0.98 11.68 83.28 0.97 -0.01 16 17 C -0.06 -1.89 11.88 83.55 0.99 -0.90 16 18 N -0.53 -20.66 11.24 -187.39 -2.11 -22.76 16 19 C 0.19 7.28 7.76 138.21 1.07 8.36 16 20 C 0.16 6.80 5.38 85.58 0.46 7.26 16 21 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.04 1.60 6.11 -2.39 -0.01 1.59 16 23 H 0.06 3.23 6.06 -2.38 -0.01 3.22 16 24 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 25 H 0.03 1.00 8.07 -2.39 -0.02 0.98 16 26 H 0.11 3.25 5.64 -2.39 -0.01 3.24 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.22 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.09 4.02 6.50 -2.39 -0.02 4.01 16 32 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 Total: -1.00 -65.80 258.49 1.67 -64.14 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.11 Total: 7.38 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.97 Total: -1.68 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -7.44 Total: -115.61 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -65.80 1.67 -64.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060394334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.079 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds