Wall clock time and date at job start Mon Mar 30 2020 03:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47436 * 2 1 4 4 C 1.50697 * 109.47265 * 120.00489 * 2 1 3 5 5 H 1.07997 * 120.00639 * 120.00224 * 4 2 1 6 6 C 1.37881 * 119.99762 * 299.99516 * 4 2 1 7 7 N 1.31516 * 120.00175 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47305 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47474 * 120.00421 * 8 6 4 11 11 H 1.48505 * 109.47244 * 240.00228 * 8 6 4 12 12 N 1.46505 * 109.46872 * 240.00102 * 2 1 3 13 13 C 1.46499 * 120.00118 * 305.38725 * 12 2 1 14 14 C 1.39034 * 119.99615 * 125.38978 * 12 2 1 15 15 C 1.38820 * 119.66967 * 11.11801 * 14 12 2 16 16 C 1.39132 * 119.00642 * 180.02562 * 15 14 12 17 17 N 1.39198 * 120.82019 * 179.97438 * 16 15 14 18 18 C 1.39684 * 118.35152 * 359.97438 * 16 15 14 19 19 C 1.37735 * 119.23500 * 0.02562 * 18 16 15 20 20 N 1.32085 * 120.93561 * 359.97438 * 19 18 16 21 21 H 1.09000 * 109.46798 * 300.00029 * 1 2 3 22 22 H 1.09002 * 109.47319 * 59.99726 * 1 2 3 23 23 H 1.08995 * 109.47436 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00228 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47447 * 270.00319 * 13 12 2 26 26 H 1.08996 * 109.46886 * 30.00273 * 13 12 2 27 27 H 1.08997 * 109.46755 * 149.99835 * 13 12 2 28 28 H 1.08001 * 120.49612 * 359.96924 * 15 14 12 29 29 H 0.97001 * 119.99732 * 180.02562 * 17 16 15 30 30 H 0.97002 * 120.00378 * 0.02562 * 17 16 15 31 31 H 1.08002 * 120.38493 * 179.73232 * 18 16 15 32 32 H 1.08003 * 119.52791 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3226 -1.1197 4.0078 9 1 3.1474 -2.2865 3.6036 10 1 3.1473 -0.1860 4.8160 11 1 1.1679 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 1.5697 -2.0541 -1.4893 14 6 2.9074 -0.0519 -2.0533 15 6 3.5071 1.1367 -1.6601 16 6 4.3943 1.7644 -2.5289 17 7 5.0164 2.9578 -2.1734 18 6 4.6450 1.1673 -3.7665 19 6 4.0110 -0.0133 -4.0846 20 7 3.1738 -0.5842 -3.2374 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7083 1.1608 3.4845 25 1 2.2483 -2.7681 -1.0226 26 1 0.5637 -2.1981 -1.0954 27 1 1.5634 -2.2105 -2.5679 28 1 3.2876 1.5682 -0.6947 29 1 5.6326 3.3854 -2.7885 30 1 4.8338 3.3618 -1.3107 31 1 5.3246 1.6286 -4.4679 32 1 4.2012 -0.4788 -5.0405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:06 Heat of formation + Delta-G solvation = 44.972654 kcal Electronic energy + Delta-G solvation = -15029.884625 eV Core-core repulsion = 12604.492765 eV Total energy + Delta-G solvation = -2425.391859 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49349 -36.45307 -34.65952 -32.78352 -30.02100 -29.46896 -28.45210 -25.50290 -25.05818 -22.84148 -21.34513 -19.63818 -16.98197 -16.93390 -16.30163 -15.03054 -14.86789 -14.72398 -14.19873 -13.91168 -13.23357 -12.99089 -12.62257 -12.43064 -11.53060 -11.36408 -11.18876 -11.01371 -10.97488 -10.72720 -10.54632 -10.16843 -10.09012 -9.41591 -8.76583 -8.67149 -8.45620 -7.53612 -6.58503 -6.07855 -4.18322 2.12073 2.38178 3.23867 3.32272 3.37304 3.97177 4.24562 4.40868 4.73344 5.19005 5.26433 5.73089 5.85319 6.02779 6.19547 6.32610 6.42839 6.54075 6.66637 6.71045 6.81899 6.89544 7.00875 7.11561 7.42697 7.64299 7.77394 7.85366 8.05025 8.12023 8.21985 8.61411 8.83601 9.10632 9.49433 10.93373 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030822 B = 0.008663 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.227833 B = 3231.263556 C = 3620.572270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.268 3.732 3 H 0.052 0.948 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.587 5.587 13 C 0.106 3.894 14 C 0.444 3.556 15 C -0.314 4.314 16 C 0.278 3.722 17 N -0.871 5.871 18 C -0.327 4.327 19 C 0.176 3.824 20 N -0.590 5.590 21 H 0.094 0.906 22 H 0.012 0.988 23 H 0.033 0.967 24 H 0.262 0.738 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.135 0.865 29 H 0.394 0.606 30 H 0.399 0.601 31 H 0.114 0.886 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 1.913 -8.197 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.167 3.833 3 H 0.070 0.930 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.295 5.295 13 C -0.037 4.037 14 C 0.208 3.792 15 C -0.345 4.345 16 C 0.165 3.835 17 N -0.410 5.410 18 C -0.356 4.356 19 C 0.017 3.983 20 N -0.312 5.312 21 H 0.112 0.888 22 H 0.031 0.969 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.222 0.778 30 H 0.227 0.773 31 H 0.133 0.867 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.950 1.094 -8.093 9.072 hybrid contribution 0.938 0.711 1.271 1.733 sum 4.888 1.805 -6.822 8.584 Atomic orbital electron populations 1.22131 0.98152 0.99786 1.00784 1.18957 0.90919 0.93256 0.80162 0.93046 1.21476 1.31313 1.13025 0.90200 0.92123 1.24897 0.94953 0.95032 0.98957 1.69877 1.36642 1.22863 1.23663 0.86450 0.78644 0.79711 0.82698 1.19772 1.20976 1.20923 1.47066 1.44313 1.14325 1.23761 1.21322 0.98994 0.83259 1.00163 1.18154 0.86630 0.87683 0.86698 1.20918 1.08354 1.01841 1.03387 1.17671 0.88728 0.85034 0.92029 1.42326 1.51613 1.24895 1.22201 1.21021 1.13211 1.02734 0.98597 1.21906 0.89304 0.90611 0.96470 1.67239 1.22768 1.37276 1.03896 0.88752 0.96853 0.94773 0.92771 0.94527 0.92054 0.91817 0.84699 0.77821 0.77307 0.86745 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.84 37.16 0.33 -3.25 16 2 C 0.27 6.67 2.48 -69.08 -0.17 6.50 16 3 H 0.05 1.37 5.51 -51.93 -0.29 1.08 16 4 C -0.52 -14.01 8.46 -34.44 -0.29 -14.31 16 5 H 0.06 1.68 7.80 -52.49 -0.41 1.27 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.39 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -13.41 2.87 -175.47 -0.50 -13.91 16 13 C 0.11 2.17 10.04 59.85 0.60 2.77 16 14 C 0.44 9.74 7.33 -155.00 -1.14 8.60 16 15 C -0.31 -6.50 9.12 -39.03 -0.36 -6.85 16 16 C 0.28 4.77 6.81 -83.64 -0.57 4.20 16 17 N -0.87 -11.36 9.08 32.51 0.30 -11.07 16 18 C -0.33 -5.17 9.99 -39.23 -0.39 -5.56 16 19 C 0.18 2.96 11.16 -17.63 -0.20 2.76 16 20 N -0.59 -11.90 9.08 -12.53 -0.11 -12.01 16 21 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.03 0.78 6.51 -51.93 -0.34 0.44 16 24 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.20 6.16 -51.93 -0.32 0.88 16 27 H 0.06 1.21 7.24 -51.93 -0.38 0.84 16 28 H 0.14 2.97 5.97 -52.49 -0.31 2.66 16 29 H 0.39 3.97 8.86 -40.82 -0.36 3.61 16 30 H 0.40 4.89 8.86 -40.82 -0.36 4.52 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 266.41 15.07 4.01 4.01 Total: -1.00 -29.25 266.41 -6.89 -36.13 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -3.91 Total: 8.21 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.28 Total: -3.54 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.31 Total: -60.76 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.25 -6.89 -36.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.105 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds