Wall clock time and date at job start Mon Mar 30 2020 03:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47446 * 2 1 4 4 C 1.50705 * 109.47467 * 120.00595 * 2 1 3 5 5 H 1.07998 * 120.00080 * 119.99922 * 4 2 1 6 6 C 1.37876 * 119.99597 * 299.99644 * 4 2 1 7 7 N 1.31515 * 119.99930 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99956 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47340 * 60.00246 * 8 6 4 10 10 H 1.48502 * 109.47281 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47442 * 300.00047 * 8 6 4 12 12 N 1.46904 * 109.47073 * 239.99924 * 2 1 3 13 13 C 1.46892 * 111.00354 * 179.11261 * 12 2 1 14 14 C 1.39291 * 110.99467 * 55.16440 * 12 2 1 15 15 N 1.32259 * 119.74722 * 58.80725 * 14 12 2 16 16 C 1.32039 * 121.69759 * 179.97438 * 15 14 12 17 17 C 1.38006 * 120.99586 * 359.97438 * 16 15 14 18 18 C 1.38843 * 119.38426 * 0.02562 * 17 16 15 19 19 C 1.38868 * 118.43711 * 359.74638 * 18 17 16 20 20 N 1.40000 * 120.51372 * 180.27095 * 19 18 17 21 21 H 1.09006 * 109.47052 * 176.39469 * 1 2 3 22 22 H 1.09004 * 109.46735 * 296.39107 * 1 2 3 23 23 H 1.08995 * 109.47375 * 56.39317 * 1 2 3 24 24 H 0.97004 * 119.99931 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47040 * 65.78700 * 13 12 2 26 26 H 1.08999 * 109.47677 * 185.78386 * 13 12 2 27 27 H 1.09000 * 109.47702 * 305.78848 * 13 12 2 28 28 H 1.08007 * 119.50778 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.31294 * 180.02562 * 17 16 15 30 30 H 1.07993 * 120.78078 * 180.02562 * 18 17 16 31 31 H 0.97002 * 120.00518 * 185.72709 * 20 19 18 32 32 H 0.97006 * 120.00207 * 5.72175 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1212 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0196 -0.6925 -1.1995 13 6 3.4879 -0.6938 -1.2442 14 6 1.4856 -0.1272 -2.3551 15 7 1.6943 1.1524 -2.6166 16 6 1.2069 1.7275 -3.7006 17 6 0.4557 1.0099 -4.6092 18 6 0.2100 -0.3368 -4.3772 19 6 0.7385 -0.9178 -3.2320 20 7 0.5224 -2.2736 -2.9582 21 1 -0.3633 -1.0257 -0.0646 22 1 -0.3633 0.4568 0.9206 23 1 -0.3634 0.5688 -0.8558 24 1 0.7083 1.1607 3.4845 25 1 3.8760 -1.2906 -0.4187 26 1 3.8223 -1.1207 -2.1897 27 1 3.8550 0.3288 -1.1571 28 1 1.3988 2.7753 -3.8790 29 1 0.0627 1.4914 -5.4924 30 1 -0.3745 -0.9198 -5.0734 31 1 0.8231 -2.6526 -2.1174 32 1 0.0720 -2.8342 -3.6093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:12 Heat of formation + Delta-G solvation = 49.427575 kcal Electronic energy + Delta-G solvation = -15325.088331 eV Core-core repulsion = 12899.889652 eV Total energy + Delta-G solvation = -2425.198680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.92646 -36.35369 -34.51167 -32.83424 -30.73722 -29.15517 -28.19862 -25.40378 -24.28192 -22.69752 -21.85513 -19.70748 -17.07658 -16.55689 -16.08974 -15.77279 -15.03382 -14.47116 -14.02681 -13.87522 -13.08187 -12.84867 -12.60550 -12.21083 -11.90352 -11.52909 -11.04203 -10.84357 -10.75192 -10.71309 -10.16999 -10.09719 -9.96560 -9.16937 -8.94376 -8.81323 -8.40607 -7.44511 -7.08703 -5.97160 -4.02753 1.71086 1.96605 3.33797 3.38302 3.40411 4.28040 4.37534 4.42733 4.73232 5.24296 5.29336 5.34081 5.51151 5.83538 5.94590 6.18766 6.29578 6.49201 6.61988 6.77502 6.88984 6.95168 7.11529 7.19749 7.58011 7.67693 7.82780 7.93392 8.16122 8.22644 8.34436 8.68321 8.70077 9.02781 9.61441 11.09298 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043611 B = 0.008302 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.880882 B = 3371.874374 C = 3491.977390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.221 3.779 3 H 0.017 0.983 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.490 5.490 13 C 0.049 3.951 14 C 0.255 3.745 15 N -0.471 5.471 16 C 0.039 3.961 17 C -0.143 4.143 18 C -0.171 4.171 19 C 0.190 3.810 20 N -0.860 5.860 21 H 0.028 0.972 22 H 0.088 0.912 23 H 0.003 0.997 24 H 0.261 0.739 25 H 0.076 0.924 26 H 0.039 0.961 27 H 0.029 0.971 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.412 0.588 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -3.186 -11.760 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.116 3.884 3 H 0.034 0.966 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.214 5.214 13 C -0.099 4.099 14 C 0.019 3.981 15 N -0.182 5.182 16 C -0.120 4.120 17 C -0.164 4.164 18 C -0.202 4.202 19 C 0.080 3.920 20 N -0.400 5.400 21 H 0.047 0.953 22 H 0.106 0.894 23 H 0.022 0.978 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.244 0.756 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.612 -3.017 -10.972 11.396 hybrid contribution -0.146 -0.384 0.256 0.484 sum -0.757 -3.401 -10.717 11.269 Atomic orbital electron populations 1.21773 0.97912 0.98531 1.00512 1.19310 0.92026 0.92858 0.84216 0.96576 1.21083 1.31247 1.12374 0.89713 0.91965 1.24925 0.95245 0.95083 0.98963 1.69897 1.36686 1.22920 1.23483 0.86569 0.79084 0.79628 0.82125 1.20327 1.21395 1.20310 1.60401 1.07793 1.52647 1.00583 1.22099 0.87113 1.00438 1.00201 1.19791 0.97301 0.87224 0.93756 1.67758 1.19959 1.11764 1.18760 1.22171 0.98782 0.99829 0.91228 1.21704 1.00034 0.94224 1.00435 1.20848 1.05205 0.95798 0.98337 1.18483 0.93916 0.86134 0.93479 1.42379 1.67361 1.06528 1.23711 0.95276 0.89368 0.97826 0.92922 0.90580 0.94238 0.95238 0.84086 0.85802 0.85759 0.75639 0.78354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.72 37.16 0.32 -3.01 16 2 C 0.22 5.78 1.85 -68.86 -0.13 5.65 16 3 H 0.02 0.49 7.96 -51.93 -0.41 0.08 16 4 C -0.51 -13.90 8.00 -34.44 -0.28 -14.17 16 5 H 0.06 1.67 6.74 -52.49 -0.35 1.32 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.88 11.30 55.43 0.63 -25.25 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.49 -10.91 3.81 -174.52 -0.66 -11.58 16 13 C 0.05 1.02 9.07 60.06 0.54 1.56 16 14 C 0.26 5.30 3.75 -154.64 -0.58 4.72 16 15 N -0.47 -9.90 9.77 -12.24 -0.12 -10.02 16 16 C 0.04 0.66 11.17 -17.55 -0.20 0.46 16 17 C -0.14 -2.07 10.10 -39.44 -0.40 -2.47 16 18 C -0.17 -2.53 10.04 -39.12 -0.39 -2.92 16 19 C 0.19 3.30 6.81 -83.34 -0.57 2.74 16 20 N -0.86 -12.56 9.08 32.62 0.30 -12.27 16 21 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.09 2.48 5.98 -51.93 -0.31 2.17 16 23 H 0.00 0.07 7.24 -51.93 -0.38 -0.31 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.08 1.57 6.72 -51.93 -0.35 1.22 16 26 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 27 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.14 2.03 8.06 -52.48 -0.42 1.60 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.41 6.54 8.15 -40.82 -0.33 6.21 16 32 H 0.39 4.29 8.86 -40.82 -0.36 3.93 16 LS Contribution 268.08 15.07 4.04 4.04 Total: -1.00 -30.63 268.08 -6.77 -37.40 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.16 Total: 7.20 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.76 Total: -5.89 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.14 Total: -59.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.63 -6.77 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.829 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds