Wall clock time and date at job start Mon Mar 30 2020 03:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47446 * 2 1 4 4 C 1.50705 * 109.47467 * 120.00595 * 2 1 3 5 5 H 1.07998 * 120.00080 * 119.99922 * 4 2 1 6 6 C 1.37876 * 119.99597 * 299.99644 * 4 2 1 7 7 N 1.31515 * 119.99930 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99956 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47340 * 60.00246 * 8 6 4 10 10 H 1.48502 * 109.47281 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47442 * 300.00047 * 8 6 4 12 12 N 1.46904 * 109.47073 * 239.99924 * 2 1 3 13 13 C 1.46892 * 111.00354 * 179.11261 * 12 2 1 14 14 C 1.39291 * 110.99467 * 55.16440 * 12 2 1 15 15 N 1.32259 * 119.74722 * 58.80725 * 14 12 2 16 16 C 1.32039 * 121.69759 * 179.97438 * 15 14 12 17 17 C 1.38006 * 120.99586 * 359.97438 * 16 15 14 18 18 C 1.38843 * 119.38426 * 0.02562 * 17 16 15 19 19 C 1.38868 * 118.43711 * 359.74638 * 18 17 16 20 20 N 1.40000 * 120.51372 * 180.27095 * 19 18 17 21 21 H 1.09006 * 109.47052 * 176.39469 * 1 2 3 22 22 H 1.09004 * 109.46735 * 296.39107 * 1 2 3 23 23 H 1.08995 * 109.47375 * 56.39317 * 1 2 3 24 24 H 0.97004 * 119.99931 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47040 * 65.78700 * 13 12 2 26 26 H 1.08999 * 109.47677 * 185.78386 * 13 12 2 27 27 H 1.09000 * 109.47702 * 305.78848 * 13 12 2 28 28 H 1.08007 * 119.50778 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.31294 * 180.02562 * 17 16 15 30 30 H 1.07993 * 120.78078 * 180.02562 * 18 17 16 31 31 H 0.97002 * 120.00518 * 185.72709 * 20 19 18 32 32 H 0.97006 * 120.00207 * 5.72175 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1212 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0196 -0.6925 -1.1995 13 6 3.4879 -0.6938 -1.2442 14 6 1.4856 -0.1272 -2.3551 15 7 1.6943 1.1524 -2.6166 16 6 1.2069 1.7275 -3.7006 17 6 0.4557 1.0099 -4.6092 18 6 0.2100 -0.3368 -4.3772 19 6 0.7385 -0.9178 -3.2320 20 7 0.5224 -2.2736 -2.9582 21 1 -0.3633 -1.0257 -0.0646 22 1 -0.3633 0.4568 0.9206 23 1 -0.3634 0.5688 -0.8558 24 1 0.7083 1.1607 3.4845 25 1 3.8760 -1.2906 -0.4187 26 1 3.8223 -1.1207 -2.1897 27 1 3.8550 0.3288 -1.1571 28 1 1.3988 2.7753 -3.8790 29 1 0.0627 1.4914 -5.4924 30 1 -0.3745 -0.9198 -5.0734 31 1 0.8231 -2.6526 -2.1174 32 1 0.0720 -2.8342 -3.6093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063086773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:11 Heat of formation + Delta-G solvation = 27.478300 kcal Electronic energy + Delta-G solvation = -15326.040123 eV Core-core repulsion = 12899.889652 eV Total energy + Delta-G solvation = -2426.150472 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31678 -38.04183 -35.77314 -34.82497 -32.14631 -31.10903 -29.55994 -27.35170 -26.04021 -24.19085 -23.29571 -21.47750 -18.62894 -17.94184 -17.79721 -17.30230 -16.82245 -15.84028 -15.79350 -15.31511 -14.82425 -14.42547 -14.04833 -13.90428 -13.42929 -13.11145 -12.99720 -12.69123 -12.63470 -12.15444 -12.10960 -12.04965 -11.91400 -11.09085 -10.52895 -10.34015 -10.21649 -9.25228 -8.36056 -8.09121 -6.23203 0.41722 0.69832 1.44029 1.46458 1.53951 2.43103 3.04899 3.12446 3.13796 3.22729 3.98391 4.15089 4.34878 4.37931 4.68512 4.73898 4.76220 4.82321 4.98578 5.03205 5.12234 5.17239 5.37401 5.48866 5.70389 5.72472 5.87949 6.20437 6.27442 6.51849 6.88939 6.92540 7.13984 7.37009 7.46239 8.96571 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043611 B = 0.008302 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.880882 B = 3371.874374 C = 3491.977390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.232 3.768 3 H -0.036 1.036 4 C -0.519 4.519 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.482 5.482 13 C 0.056 3.944 14 C 0.204 3.796 15 N -0.513 5.513 16 C 0.017 3.983 17 C -0.123 4.123 18 C -0.163 4.163 19 C 0.185 3.815 20 N -0.851 5.851 21 H 0.034 0.966 22 H 0.061 0.939 23 H 0.003 0.997 24 H 0.261 0.739 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.006 0.994 28 H 0.160 0.840 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.406 0.594 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 -4.471 -13.476 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 H -0.018 1.018 4 C -0.558 4.558 5 H 0.084 0.916 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.205 5.205 13 C -0.092 4.092 14 C -0.031 4.031 15 N -0.225 5.225 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.194 4.194 19 C 0.074 3.926 20 N -0.390 5.390 21 H 0.053 0.947 22 H 0.079 0.921 23 H 0.022 0.978 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.024 0.976 28 H 0.177 0.823 29 H 0.187 0.813 30 H 0.184 0.816 31 H 0.236 0.764 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.260 -4.347 -12.721 13.502 hybrid contribution 0.019 0.087 0.615 0.622 sum -1.241 -4.260 -12.106 12.893 Atomic orbital electron populations 1.21495 0.97772 0.98359 0.98972 1.18948 0.91976 0.90348 0.86126 1.01794 1.21384 1.31318 1.12491 0.90586 0.91622 1.25793 0.95335 0.95740 1.02153 1.70054 1.37778 1.24346 1.24101 0.85488 0.78661 0.78696 0.78017 1.19650 1.21218 1.19205 1.60262 1.08114 1.51933 1.00210 1.22044 0.86912 0.99026 1.01234 1.19818 1.00591 0.88141 0.94511 1.67590 1.21517 1.12515 1.20916 1.22651 0.99510 1.01063 0.91026 1.22177 0.97488 0.94009 1.00582 1.21363 1.04194 0.96257 0.97591 1.18613 0.93359 0.86864 0.93758 1.42332 1.66982 1.05847 1.23865 0.94677 0.92059 0.97783 0.92981 0.91044 0.91797 0.97569 0.82318 0.81299 0.81643 0.76398 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.72 8.72 71.98 0.63 -5.09 16 2 C 0.23 12.62 1.85 44.17 0.08 12.71 16 3 H -0.04 -2.26 7.96 -2.39 -0.02 -2.28 16 4 C -0.52 -29.18 8.00 25.60 0.20 -28.98 16 5 H 0.07 3.56 6.74 -2.91 -0.02 3.54 16 6 C 0.01 0.46 5.30 84.65 0.45 0.91 16 7 N -0.92 -55.15 11.30 21.45 0.24 -54.90 16 8 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 N -0.48 -21.89 3.81 -706.06 -2.69 -24.57 16 13 C 0.06 2.37 9.07 127.69 1.16 3.52 16 14 C 0.20 8.45 3.75 133.15 0.50 8.95 16 15 N -0.51 -21.85 9.77 -192.62 -1.88 -23.73 16 16 C 0.02 0.56 11.17 84.61 0.94 1.50 16 17 C -0.12 -3.07 10.10 22.36 0.23 -2.85 16 18 C -0.16 -4.17 10.04 22.57 0.23 -3.95 16 19 C 0.19 6.06 6.81 38.35 0.26 6.33 16 20 N -0.85 -22.95 9.08 -50.70 -0.46 -23.41 16 21 H 0.03 1.75 8.14 -2.38 -0.02 1.73 16 22 H 0.06 3.57 5.98 -2.39 -0.01 3.55 16 23 H 0.00 0.16 7.24 -2.39 -0.02 0.15 16 24 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 25 H 0.07 3.02 6.72 -2.39 -0.02 3.01 16 26 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 27 H 0.01 0.26 8.12 -2.39 -0.02 0.24 16 28 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.41 12.34 8.15 -92.71 -0.76 11.58 16 32 H 0.41 7.68 8.86 -92.70 -0.82 6.86 16 Total: -1.00 -68.79 268.08 1.48 -67.32 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.44 Total: 20.06 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 4.68 Total: -6.94 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -4.79 Total: -126.62 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -68.79 1.48 -67.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.796 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds