Wall clock time and date at job start Mon Mar 30 2020 03:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47155 * 239.99965 * 2 1 3 5 5 H 1.08003 * 119.99554 * 239.99996 * 4 2 1 6 6 C 1.37874 * 120.00154 * 60.00258 * 4 2 1 7 7 N 1.31509 * 120.00175 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99806 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47508 * 89.99981 * 8 6 4 10 10 H 1.48503 * 109.46861 * 209.99521 * 8 6 4 11 11 H 1.48494 * 109.47227 * 329.99575 * 8 6 4 12 12 N 1.46503 * 109.46962 * 119.99894 * 2 1 3 13 13 C 1.46497 * 120.00200 * 64.73230 * 12 2 1 14 14 C 1.40045 * 119.99656 * 244.73386 * 12 2 1 15 15 C 1.39413 * 120.40518 * 174.28949 * 14 12 2 16 16 C 1.38281 * 118.44372 * 179.97438 * 15 14 12 17 17 C 1.39083 * 119.17563 * 359.97438 * 16 15 14 18 18 N 1.39315 * 119.62917 * 179.97438 * 17 16 15 19 19 N 1.32319 * 120.74482 * 0.02562 * 17 16 15 20 20 C 1.31992 * 121.69978 * 359.97438 * 19 17 16 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47301 * 300.00066 * 1 2 3 23 23 H 1.08996 * 109.46993 * 60.00276 * 1 2 3 24 24 H 0.97004 * 120.00296 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47189 * 270.00148 * 13 12 2 26 26 H 1.09006 * 109.47068 * 29.99694 * 13 12 2 27 27 H 1.08987 * 109.47263 * 150.00045 * 13 12 2 28 28 H 1.08004 * 120.77693 * 359.95063 * 15 14 12 29 29 H 1.08001 * 120.41179 * 180.27646 * 16 15 14 30 30 H 0.96997 * 119.99539 * 359.97438 * 18 17 16 31 31 H 0.96993 * 120.00258 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.62813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0184 -0.6906 1.1962 13 6 1.7520 -2.1198 1.3770 14 6 2.7398 0.0155 2.1669 15 6 3.1059 -0.6020 3.3620 16 6 3.8182 0.1330 4.2918 17 6 4.1441 1.4545 4.0059 18 7 4.8610 2.2039 4.9362 19 7 3.7800 2.0085 2.8608 20 6 3.0996 1.3368 1.9508 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7090 1.1612 -3.4845 25 1 0.8097 -2.2492 1.9094 26 1 1.6879 -2.6036 0.4023 27 1 2.5599 -2.5698 1.9537 28 1 2.8392 -1.6302 3.5571 29 1 4.1220 -0.3151 5.2263 30 1 5.1297 1.8035 5.7778 31 1 5.0908 3.1261 4.7426 32 1 2.8200 1.8219 1.0273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:27 Heat of formation + Delta-G solvation = 48.864130 kcal Electronic energy + Delta-G solvation = -14912.907110 eV Core-core repulsion = 12487.683997 eV Total energy + Delta-G solvation = -2425.223112 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62273 -36.67193 -33.83107 -32.77633 -31.47256 -29.25135 -28.24262 -25.24756 -24.89862 -23.02802 -21.48063 -19.69413 -17.23800 -16.84645 -16.14854 -15.92409 -14.94026 -14.25703 -13.98376 -13.81120 -13.23109 -13.03544 -12.66671 -12.35614 -12.17815 -11.55715 -11.25246 -10.96714 -10.87503 -10.67374 -10.38074 -10.14406 -10.06863 -9.29066 -9.14982 -8.81604 -8.46008 -8.17151 -6.20220 -5.94850 -4.18329 1.85697 2.31384 3.25148 3.32622 3.35731 3.99636 4.23377 4.42217 4.61753 5.18770 5.26704 5.52384 5.64596 5.83555 5.91896 6.19914 6.24252 6.46070 6.55919 6.67679 6.75211 6.91803 6.99836 7.11867 7.39883 7.65995 7.78151 7.87257 7.93173 8.12716 8.33618 8.58178 8.88533 8.91283 9.48826 10.94160 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040004 B = 0.007324 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.755474 B = 3822.080254 C = 4001.633483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.268 3.732 3 H 0.050 0.950 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.608 5.608 13 C 0.102 3.898 14 C 0.143 3.857 15 C -0.137 4.137 16 C -0.188 4.188 17 C 0.318 3.682 18 N -0.871 5.871 19 N -0.504 5.504 20 C 0.065 3.935 21 H 0.029 0.971 22 H 0.011 0.989 23 H 0.091 0.909 24 H 0.264 0.736 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.398 0.602 31 H 0.395 0.605 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 -1.936 10.615 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.167 3.833 3 H 0.067 0.933 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.317 5.317 13 C -0.042 4.042 14 C 0.034 3.966 15 C -0.168 4.168 16 C -0.214 4.214 17 C 0.083 3.917 18 N -0.418 5.418 19 N -0.220 5.220 20 C -0.097 4.097 21 H 0.048 0.952 22 H 0.030 0.970 23 H 0.110 0.890 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.226 0.774 31 H 0.223 0.777 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.329 -1.116 10.076 10.670 hybrid contribution 0.239 -1.226 -0.446 1.327 sum 3.568 -2.342 9.630 10.534 Atomic orbital electron populations 1.22125 0.98548 0.99501 1.00560 1.18863 0.90745 0.93207 0.80498 0.93272 1.21386 1.31598 1.13186 0.90274 0.92129 1.24895 0.94901 0.94991 0.98978 1.69865 1.36373 1.22658 1.23836 0.86509 0.79215 0.79359 0.82419 1.20642 1.21098 1.19936 1.47044 1.56466 1.07530 1.20620 1.21387 0.98266 0.82675 1.01850 1.18807 0.94640 0.93147 0.89980 1.20798 1.02732 1.00114 0.93191 1.20961 1.05434 0.93986 1.00974 1.18065 0.95314 0.88916 0.89445 1.41883 1.64884 1.15444 1.19634 1.66985 1.14850 1.38373 1.01750 1.22247 0.98279 0.91005 0.98178 0.95214 0.97012 0.89024 0.92649 0.95067 0.90615 0.93538 0.85708 0.86404 0.77433 0.77729 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.04 37.16 0.34 -3.17 16 2 C 0.27 6.50 2.59 -69.08 -0.18 6.32 16 3 H 0.05 1.28 5.34 -51.93 -0.28 1.01 16 4 C -0.53 -13.81 7.96 -34.44 -0.27 -14.08 16 5 H 0.06 1.60 7.00 -52.48 -0.37 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.61 -12.92 2.90 -173.13 -0.50 -13.42 16 13 C 0.10 1.86 9.26 59.85 0.55 2.41 16 14 C 0.14 2.88 6.56 -83.52 -0.55 2.33 16 15 C -0.14 -2.36 9.25 -39.13 -0.36 -2.72 16 16 C -0.19 -2.96 9.93 -39.25 -0.39 -3.35 16 17 C 0.32 5.38 7.75 -154.80 -1.20 4.18 16 18 N -0.87 -10.93 9.09 31.17 0.28 -10.65 16 19 N -0.50 -9.91 10.39 -12.23 -0.13 -10.04 16 20 C 0.07 1.37 10.48 -17.34 -0.18 1.18 16 21 H 0.03 0.67 7.79 -51.93 -0.40 0.26 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.45 6.67 -51.93 -0.35 1.11 16 27 H 0.05 0.73 6.50 -51.94 -0.34 0.40 16 28 H 0.13 1.88 6.43 -52.48 -0.34 1.54 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.40 3.73 8.82 -40.82 -0.36 3.37 16 31 H 0.39 4.62 8.95 -40.82 -0.37 4.25 16 32 H 0.16 3.52 5.75 -52.49 -0.30 3.21 16 LS Contribution 264.65 15.07 3.99 3.99 Total: -1.00 -28.68 264.65 -6.91 -35.59 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.82 Total: 7.83 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.34 Total: -5.27 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.84 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.68 -6.91 -35.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.454 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds