Wall clock time and date at job start Mon Mar 30 2020 03:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47155 * 239.99965 * 2 1 3 5 5 H 1.08003 * 119.99554 * 239.99996 * 4 2 1 6 6 C 1.37874 * 120.00154 * 60.00258 * 4 2 1 7 7 N 1.31509 * 120.00175 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99806 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47508 * 89.99981 * 8 6 4 10 10 H 1.48503 * 109.46861 * 209.99521 * 8 6 4 11 11 H 1.48494 * 109.47227 * 329.99575 * 8 6 4 12 12 N 1.46503 * 109.46962 * 119.99894 * 2 1 3 13 13 C 1.46497 * 120.00200 * 64.73230 * 12 2 1 14 14 C 1.40045 * 119.99656 * 244.73386 * 12 2 1 15 15 C 1.39413 * 120.40518 * 174.28949 * 14 12 2 16 16 C 1.38281 * 118.44372 * 179.97438 * 15 14 12 17 17 C 1.39083 * 119.17563 * 359.97438 * 16 15 14 18 18 N 1.39315 * 119.62917 * 179.97438 * 17 16 15 19 19 N 1.32319 * 120.74482 * 0.02562 * 17 16 15 20 20 C 1.31992 * 121.69978 * 359.97438 * 19 17 16 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47301 * 300.00066 * 1 2 3 23 23 H 1.08996 * 109.46993 * 60.00276 * 1 2 3 24 24 H 0.97004 * 120.00296 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47189 * 270.00148 * 13 12 2 26 26 H 1.09006 * 109.47068 * 29.99694 * 13 12 2 27 27 H 1.08987 * 109.47263 * 150.00045 * 13 12 2 28 28 H 1.08004 * 120.77693 * 359.95063 * 15 14 12 29 29 H 1.08001 * 120.41179 * 180.27646 * 16 15 14 30 30 H 0.96997 * 119.99539 * 359.97438 * 18 17 16 31 31 H 0.96993 * 120.00258 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.62813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0184 -0.6906 1.1962 13 6 1.7520 -2.1198 1.3770 14 6 2.7398 0.0155 2.1669 15 6 3.1059 -0.6020 3.3620 16 6 3.8182 0.1330 4.2918 17 6 4.1441 1.4545 4.0059 18 7 4.8610 2.2039 4.9362 19 7 3.7800 2.0085 2.8608 20 6 3.0996 1.3368 1.9508 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7090 1.1612 -3.4845 25 1 0.8097 -2.2492 1.9094 26 1 1.6879 -2.6036 0.4023 27 1 2.5599 -2.5698 1.9537 28 1 2.8392 -1.6302 3.5571 29 1 4.1220 -0.3151 5.2263 30 1 5.1297 1.8035 5.7778 31 1 5.0908 3.1261 4.7426 32 1 2.8200 1.8219 1.0273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063086810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:27 Heat of formation + Delta-G solvation = 30.250002 kcal Electronic energy + Delta-G solvation = -14913.714279 eV Core-core repulsion = 12487.683997 eV Total energy + Delta-G solvation = -2426.030282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03348 -38.25263 -35.39291 -34.35109 -32.99316 -30.98373 -29.64792 -27.25373 -26.40114 -24.48935 -22.99967 -21.35129 -18.76655 -18.30203 -17.79783 -17.40483 -16.63467 -15.78957 -15.45991 -15.24463 -14.84875 -14.51247 -14.13344 -13.97119 -13.68883 -13.36361 -13.00628 -12.69900 -12.66650 -12.40502 -12.13335 -11.90286 -11.74342 -11.05545 -10.61872 -10.52212 -10.21706 -9.55275 -8.15973 -7.48038 -6.26418 0.46682 0.91404 1.41914 1.43600 1.52968 2.38741 2.65482 2.98615 3.15126 3.20560 3.90579 4.18281 4.30073 4.49253 4.57280 4.73449 4.81060 4.90966 5.02083 5.08639 5.15017 5.22250 5.31971 5.48902 5.62775 5.74342 5.91470 6.21087 6.53542 6.68241 6.75050 6.94111 7.03700 7.44937 7.63629 8.91679 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040004 B = 0.007324 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.755474 B = 3822.080254 C = 4001.633483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H 0.022 0.978 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.621 5.621 13 C 0.103 3.897 14 C 0.118 3.882 15 C -0.125 4.125 16 C -0.177 4.177 17 C 0.317 3.683 18 N -0.853 5.853 19 N -0.531 5.531 20 C 0.035 3.965 21 H 0.034 0.966 22 H 0.019 0.981 23 H 0.067 0.933 24 H 0.264 0.736 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.163 0.837 30 H 0.416 0.584 31 H 0.400 0.600 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 -3.388 12.663 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.574 4.574 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.332 5.332 13 C -0.040 4.040 14 C 0.011 3.989 15 C -0.155 4.155 16 C -0.202 4.202 17 C 0.079 3.921 18 N -0.402 5.402 19 N -0.249 5.249 20 C -0.125 4.125 21 H 0.053 0.947 22 H 0.038 0.962 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.171 0.829 29 H 0.181 0.819 30 H 0.248 0.752 31 H 0.229 0.771 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.371 -2.573 12.169 13.183 hybrid contribution 0.018 -0.715 -0.886 1.139 sum 4.389 -3.288 11.282 12.545 Atomic orbital electron populations 1.21929 0.98338 0.99414 0.99660 1.18527 0.90835 0.92093 0.81584 0.96039 1.21641 1.31384 1.13015 0.91389 0.92609 1.25637 0.95163 0.95665 1.01685 1.69991 1.37359 1.23821 1.24325 0.85556 0.78701 0.78334 0.79018 1.19783 1.21027 1.19811 1.46857 1.57558 1.08568 1.20174 1.21479 1.00001 0.80936 1.01584 1.18958 0.95730 0.93058 0.91144 1.21158 1.01313 1.01278 0.91776 1.21426 1.03531 0.93190 1.02031 1.18520 0.94606 0.89972 0.89029 1.41862 1.63351 1.15519 1.19454 1.66904 1.15915 1.39116 1.02917 1.21873 1.00527 0.91928 0.98158 0.94699 0.96223 0.91470 0.92686 0.93674 0.92248 0.90871 0.82947 0.81936 0.75207 0.77098 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.04 71.98 0.65 -5.87 16 2 C 0.27 13.67 2.59 44.25 0.11 13.78 16 3 H 0.02 1.21 5.34 -2.39 -0.01 1.20 16 4 C -0.54 -28.77 7.96 25.60 0.20 -28.56 16 5 H 0.06 2.98 7.00 -2.91 -0.02 2.96 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -51.69 11.32 21.45 0.24 -51.44 16 8 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.62 -26.45 2.90 -701.67 -2.03 -28.48 16 13 C 0.10 3.59 9.26 127.77 1.18 4.78 16 14 C 0.12 4.72 6.56 38.21 0.25 4.97 16 15 C -0.12 -3.91 9.25 22.56 0.21 -3.70 16 16 C -0.18 -4.84 9.93 22.48 0.22 -4.62 16 17 C 0.32 9.93 7.75 132.97 1.03 10.96 16 18 N -0.85 -18.59 9.09 -55.31 -0.50 -19.10 16 19 N -0.53 -20.87 10.39 -192.62 -2.00 -22.87 16 20 C 0.04 1.53 10.48 84.76 0.89 2.41 16 21 H 0.03 1.59 7.79 -2.39 -0.02 1.57 16 22 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 2.24 6.67 -2.38 -0.02 2.22 16 27 H 0.07 2.11 6.50 -2.39 -0.02 2.09 16 28 H 0.15 3.89 6.43 -2.91 -0.02 3.87 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 30 H 0.42 5.99 8.82 -92.71 -0.82 5.17 16 31 H 0.40 8.33 8.95 -92.71 -0.83 7.50 16 32 H 0.13 6.24 5.75 -2.91 -0.02 6.22 16 Total: -1.00 -63.14 264.65 2.44 -60.70 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.49 Total: 20.59 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.20 Total: -4.42 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -4.29 Total: -121.89 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.14 2.44 -60.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.947 kcal (2) G-P(sol) polarization free energy of solvation -63.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds