Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47371 * 2 1 4 4 N 1.46501 * 109.47580 * 179.97438 * 3 2 1 5 5 N 1.40027 * 126.05352 * 269.96389 * 4 3 2 6 6 C 1.30761 * 108.21326 * 180.02562 * 5 4 3 7 7 C 1.40138 * 108.19619 * 359.97438 * 6 5 4 8 8 C 1.34996 * 107.90959 * 359.97438 * 7 6 5 9 9 C 1.50760 * 109.37510 * 180.02562 * 8 7 6 10 10 N 1.46749 * 107.48457 * 0.02562 * 9 8 7 11 11 C 1.36931 * 126.84054 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00098 * 0.02562 * 11 10 9 13 13 C 1.38812 * 120.00429 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99535 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00187 * 180.27849 * 13 11 10 16 16 H 1.48497 * 109.47173 * 179.72427 * 15 13 11 17 17 H 1.48506 * 109.46866 * 299.71963 * 15 13 11 18 18 H 1.48501 * 109.47438 * 59.72083 * 15 13 11 19 19 C 1.46745 * 106.32362 * 0.25950 * 10 9 8 20 20 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47078 * 300.00050 * 1 2 3 22 22 H 1.09001 * 109.47090 * 59.99874 * 1 2 3 23 23 H 1.09001 * 109.47078 * 239.99950 * 2 1 3 24 24 H 1.09001 * 109.47090 * 120.00126 * 2 1 3 25 25 H 1.09001 * 109.47060 * 59.99939 * 3 2 1 26 26 H 1.09001 * 109.47116 * 300.00110 * 3 2 1 27 27 H 1.08002 * 125.90487 * 179.97438 * 6 5 4 28 28 H 1.08995 * 109.85030 * 240.52366 * 9 8 7 29 29 H 1.09000 * 109.93945 * 119.53512 * 9 8 7 30 30 H 0.97005 * 119.99717 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.84295 * 119.22306 * 19 10 9 32 32 H 1.08994 * 109.84663 * 240.25212 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3287 1.4434 1.1330 6 6 5.5736 1.4437 0.7330 7 6 5.5829 1.4424 -0.6684 8 6 4.3011 1.4407 -1.0920 9 6 4.2726 1.4386 -2.5994 10 7 5.6636 1.4385 -3.0667 11 6 6.0929 1.4374 -4.3670 12 1 5.3741 1.4368 -5.1730 13 6 7.4520 1.4369 -4.6493 14 7 8.3281 1.4381 -3.6670 15 14 8.0376 1.4432 -6.4231 16 1 9.5222 1.4484 -6.4542 17 1 7.5322 0.2306 -7.1155 18 1 7.5238 2.6556 -7.1097 19 6 6.5031 1.4341 -1.8631 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 6.4442 1.4447 1.3720 28 1 3.7604 2.3302 -2.9611 29 1 3.7612 0.5462 -2.9602 30 1 9.2779 1.4381 -3.8642 31 1 7.1244 0.5386 -1.8486 32 1 7.1329 2.3235 -1.8480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082390326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = 114.961767 kcal Electronic energy + Delta-G solvation = -14865.538420 eV Core-core repulsion = 12443.181516 eV Total energy + Delta-G solvation = -2422.356904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.93698 -36.32912 -35.08902 -32.10561 -31.20772 -28.92778 -27.17132 -25.66475 -24.79029 -21.96463 -21.25453 -19.66057 -19.08164 -16.81372 -15.78252 -15.21641 -15.09436 -14.64371 -13.88422 -13.67853 -13.37029 -12.84326 -12.65527 -12.34087 -12.02103 -11.56142 -11.31951 -11.21636 -11.04059 -10.92958 -10.79743 -10.60177 -10.23829 -10.01838 -9.75891 -8.92645 -8.69789 -7.63089 -6.77957 -5.76898 -3.12074 2.36181 2.78105 3.40159 3.43457 3.43720 3.45691 4.41702 4.68607 4.80378 4.97463 5.10560 5.22337 5.41309 5.45496 5.46249 5.56505 5.60119 5.85483 5.91171 5.97057 6.13068 6.26992 6.44850 6.46277 6.90345 7.25600 7.48181 7.54486 7.60168 7.80411 8.13159 8.26216 9.14450 9.73254 10.41642 11.36280 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042741 B = 0.007073 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.945300 B = 3957.597023 C = 4499.288420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.137 3.863 4 N -0.360 5.360 5 N -0.305 5.305 6 C 0.068 3.932 7 C -0.256 4.256 8 C 0.037 3.963 9 C 0.219 3.781 10 N -0.596 5.596 11 C -0.230 4.230 12 H 0.083 0.917 13 C -0.003 4.003 14 N -0.917 5.917 15 Si 0.918 3.082 16 H -0.289 1.289 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.245 3.755 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.180 0.820 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.256 0.744 31 H 0.054 0.946 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 -0.982 6.248 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.143 5.143 5 N -0.126 5.126 6 C -0.118 4.118 7 C -0.268 4.268 8 C -0.090 4.090 9 C 0.091 3.909 10 N -0.323 5.323 11 C -0.358 4.358 12 H 0.101 0.899 13 C -0.200 4.200 14 N -0.564 5.564 15 Si 0.748 3.252 16 H -0.215 1.215 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.120 3.880 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.196 0.804 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.995 -0.964 7.124 13.984 hybrid contribution 0.855 -0.024 -1.416 1.654 sum -11.139 -0.988 5.708 12.556 Atomic orbital electron populations 1.21689 0.94650 1.02194 1.02008 1.21939 0.96254 0.96406 1.03426 1.21651 0.75201 0.97901 1.03753 1.47888 1.05181 1.59177 1.02061 1.77244 1.01224 1.26761 1.07332 1.23163 0.94764 1.00354 0.93477 1.21938 0.96996 1.13012 0.94828 1.21784 0.91797 1.01988 0.93392 1.19094 0.90258 0.98796 0.82770 1.44021 0.98140 1.87755 1.02406 1.18883 0.91118 1.45298 0.80458 0.89891 1.24843 0.95587 1.01645 0.97963 1.69958 1.00986 1.55879 1.29534 0.86112 0.77640 0.77960 0.83487 1.21457 1.21021 1.21003 1.19032 0.89208 1.01196 0.78612 0.92199 0.92490 0.92343 0.91202 0.91194 0.89343 0.89361 0.80354 0.94547 0.94557 0.93397 0.92816 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.65 6.26 -26.74 -0.17 -1.82 16 3 C 0.14 1.80 6.44 -4.04 -0.03 1.77 16 4 N -0.36 -6.50 3.62 -57.14 -0.21 -6.71 16 5 N -0.30 -5.79 12.57 30.67 0.39 -5.40 16 6 C 0.07 1.30 12.03 -17.29 -0.21 1.09 16 7 C -0.26 -5.67 6.98 -105.01 -0.73 -6.41 16 8 C 0.04 0.77 7.66 -82.24 -0.63 0.14 16 9 C 0.22 4.76 7.28 -5.03 -0.04 4.72 16 10 N -0.60 -15.67 3.42 -175.49 -0.60 -16.27 16 11 C -0.23 -6.38 10.34 -15.06 -0.16 -6.53 16 12 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 13 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 14 N -0.92 -26.80 10.49 55.49 0.58 -26.22 16 15 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 C 0.25 6.30 5.41 -5.01 -0.03 6.27 16 20 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.18 2.79 8.06 -52.49 -0.42 2.37 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.05 1.50 7.53 -51.93 -0.39 1.11 16 32 H 0.05 1.52 7.50 -51.93 -0.39 1.13 16 LS Contribution 271.29 15.07 4.09 4.09 Total: -1.00 -31.29 271.29 -7.04 -38.33 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -4.55 Total: -2.66 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.71 Total: -1.85 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.16 Total: -54.60 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.29 -7.04 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082390326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.295 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds