Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47371 * 2 1 4 4 N 1.46501 * 109.47580 * 179.97438 * 3 2 1 5 5 N 1.40027 * 126.05352 * 269.96389 * 4 3 2 6 6 C 1.30761 * 108.21326 * 180.02562 * 5 4 3 7 7 C 1.40138 * 108.19619 * 359.97438 * 6 5 4 8 8 C 1.34996 * 107.90959 * 359.97438 * 7 6 5 9 9 C 1.50760 * 109.37510 * 180.02562 * 8 7 6 10 10 N 1.46749 * 107.48457 * 0.02562 * 9 8 7 11 11 C 1.36931 * 126.84054 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00098 * 0.02562 * 11 10 9 13 13 C 1.38812 * 120.00429 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99535 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00187 * 180.27849 * 13 11 10 16 16 H 1.48497 * 109.47173 * 179.72427 * 15 13 11 17 17 H 1.48506 * 109.46866 * 299.71963 * 15 13 11 18 18 H 1.48501 * 109.47438 * 59.72083 * 15 13 11 19 19 C 1.46745 * 106.32362 * 0.25950 * 10 9 8 20 20 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47078 * 300.00050 * 1 2 3 22 22 H 1.09001 * 109.47090 * 59.99874 * 1 2 3 23 23 H 1.09001 * 109.47078 * 239.99950 * 2 1 3 24 24 H 1.09001 * 109.47090 * 120.00126 * 2 1 3 25 25 H 1.09001 * 109.47060 * 59.99939 * 3 2 1 26 26 H 1.09001 * 109.47116 * 300.00110 * 3 2 1 27 27 H 1.08002 * 125.90487 * 179.97438 * 6 5 4 28 28 H 1.08995 * 109.85030 * 240.52366 * 9 8 7 29 29 H 1.09000 * 109.93945 * 119.53512 * 9 8 7 30 30 H 0.97005 * 119.99717 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.84295 * 119.22306 * 19 10 9 32 32 H 1.08994 * 109.84663 * 240.25212 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3287 1.4434 1.1330 6 6 5.5736 1.4437 0.7330 7 6 5.5829 1.4424 -0.6684 8 6 4.3011 1.4407 -1.0920 9 6 4.2726 1.4386 -2.5994 10 7 5.6636 1.4385 -3.0667 11 6 6.0929 1.4374 -4.3670 12 1 5.3741 1.4368 -5.1730 13 6 7.4520 1.4369 -4.6493 14 7 8.3281 1.4381 -3.6670 15 14 8.0376 1.4432 -6.4231 16 1 9.5222 1.4484 -6.4542 17 1 7.5322 0.2306 -7.1155 18 1 7.5238 2.6556 -7.1097 19 6 6.5031 1.4341 -1.8631 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 6.4442 1.4447 1.3720 28 1 3.7604 2.3302 -2.9611 29 1 3.7612 0.5462 -2.9602 30 1 9.2779 1.4381 -3.8642 31 1 7.1244 0.5386 -1.8486 32 1 7.1329 2.3235 -1.8480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082390326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = 95.569674 kcal Electronic energy + Delta-G solvation = -14866.379324 eV Core-core repulsion = 12443.181516 eV Total energy + Delta-G solvation = -2423.197808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.51172 -38.11185 -36.22339 -34.11595 -32.46322 -30.81037 -28.81600 -27.17372 -26.48497 -23.20848 -22.89704 -21.22120 -20.61910 -18.80622 -17.38577 -16.71535 -16.67992 -16.06640 -15.26343 -15.19761 -15.10934 -14.60555 -13.91111 -13.46092 -13.37399 -13.09207 -12.96164 -12.80533 -12.66824 -12.37941 -12.25914 -12.13289 -11.85059 -11.76946 -11.63696 -10.91669 -10.20413 -9.41008 -8.77731 -7.87935 -5.27203 0.80995 1.37517 1.51119 1.55105 1.61479 1.79560 2.48492 3.34257 3.34831 3.43754 3.74876 3.90620 4.06024 4.15965 4.27701 4.45016 4.50047 4.61149 4.72446 4.83209 4.85495 5.10433 5.14433 5.22748 5.35617 5.41600 5.41863 5.69040 5.72692 6.08910 6.09769 6.68226 7.02955 7.66781 8.35496 9.24858 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042741 B = 0.007073 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.945300 B = 3957.597023 C = 4499.288420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.125 3.875 4 N -0.350 5.350 5 N -0.304 5.304 6 C 0.071 3.929 7 C -0.291 4.291 8 C 0.044 3.956 9 C 0.218 3.782 10 N -0.619 5.619 11 C -0.247 4.247 12 H 0.097 0.903 13 C -0.062 4.062 14 N -0.951 5.951 15 Si 0.990 3.010 16 H -0.295 1.295 17 H -0.273 1.273 18 H -0.273 1.273 19 C 0.263 3.737 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.208 0.792 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.251 0.749 31 H 0.017 0.983 32 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 -0.889 6.151 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.005 3.995 4 N -0.133 5.133 5 N -0.125 5.125 6 C -0.114 4.114 7 C -0.303 4.303 8 C -0.084 4.084 9 C 0.091 3.909 10 N -0.346 5.346 11 C -0.374 4.374 12 H 0.115 0.885 13 C -0.255 4.255 14 N -0.598 5.598 15 Si 0.817 3.183 16 H -0.221 1.221 17 H -0.199 1.199 18 H -0.199 1.199 19 C 0.137 3.863 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.224 0.776 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -14.265 -0.874 7.044 15.934 hybrid contribution 1.436 -0.057 -1.337 1.963 sum -12.829 -0.931 5.706 14.072 Atomic orbital electron populations 1.21657 0.91956 1.03077 1.03175 1.21875 0.98439 0.94949 1.02091 1.22164 0.72207 0.99405 1.05743 1.48300 1.06785 1.57436 1.00764 1.77231 1.01116 1.26508 1.07648 1.23553 0.95873 0.99471 0.92479 1.21732 0.96798 1.16309 0.95442 1.21626 0.91954 1.01461 0.93395 1.19173 0.88154 1.00030 0.83508 1.44295 1.00255 1.87813 1.02266 1.19379 0.91757 1.44704 0.81591 0.88518 1.25795 0.95787 1.01668 1.02271 1.70190 1.00853 1.57098 1.31706 0.84996 0.76488 0.78474 0.78369 1.22066 1.19896 1.19865 1.18525 0.89409 0.97806 0.80563 0.91521 0.91195 0.91311 0.92728 0.92380 0.87339 0.87436 0.77556 0.92741 0.92933 0.94010 0.96538 0.96427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.13 -2.82 6.26 30.59 0.19 -2.63 16 3 C 0.12 2.90 6.44 86.38 0.56 3.45 16 4 N -0.35 -11.94 3.62 -334.71 -1.21 -13.15 16 5 N -0.30 -11.00 12.57 -56.88 -0.72 -11.71 16 6 C 0.07 2.68 12.03 85.31 1.03 3.71 16 7 C -0.29 -13.01 6.98 -20.12 -0.14 -13.15 16 8 C 0.04 1.80 7.66 41.31 0.32 2.11 16 9 C 0.22 9.30 7.28 85.60 0.62 9.92 16 10 N -0.62 -33.06 3.42 -709.13 -2.42 -35.49 16 11 C -0.25 -13.76 10.34 84.03 0.87 -12.89 16 12 H 0.10 4.96 7.83 -2.91 -0.02 4.94 16 13 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 14 N -0.95 -57.63 10.49 21.65 0.23 -57.40 16 15 Si 0.99 44.91 29.55 68.60 2.03 46.94 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C 0.26 14.12 5.41 85.62 0.46 14.58 16 20 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.21 6.24 8.06 -2.91 -0.02 6.22 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 31 H 0.02 0.99 7.53 -2.39 -0.02 0.97 16 32 H 0.02 1.05 7.50 -2.39 -0.02 1.03 16 Total: -1.00 -68.48 271.29 4.08 -64.40 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.09 Total: 5.57 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.09 Total: 0.84 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.12 Total: -117.75 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.48 4.08 -64.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082390326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.971 kcal (2) G-P(sol) polarization free energy of solvation -68.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds