Wall clock time and date at job start Mon Mar 30 2020 03:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.81778 * 2 1 4 4 C 1.54882 * 110.75952 * 236.65892 * 2 1 3 5 5 C 1.54268 * 104.19992 * 203.74429 * 4 2 1 6 6 C 1.53876 * 106.59607 * 23.60931 * 5 4 2 7 7 H 1.08998 * 110.03805 * 240.71854 * 6 5 4 8 8 C 1.50698 * 110.03304 * 119.28364 * 6 5 4 9 9 N 1.31397 * 125.16050 * 302.52741 * 8 6 5 10 10 N 1.40451 * 107.17954 * 179.90934 * 9 8 6 11 11 H 0.97006 * 127.01593 * 180.11600 * 10 9 8 12 12 C 1.37020 * 105.97202 * 0.34963 * 10 9 8 13 13 C 1.40372 * 126.31764 * 179.77197 * 12 10 9 14 14 H 1.08003 * 120.00054 * 180.02562 * 13 12 10 15 15 C 1.40264 * 119.99929 * 0.02562 * 13 12 10 16 16 N 1.30634 * 120.00475 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99737 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46873 * 90.00333 * 17 15 13 19 19 H 1.48496 * 109.47374 * 209.99897 * 17 15 13 20 20 H 1.48498 * 109.47347 * 330.00567 * 17 15 13 21 21 N 1.32239 * 125.15637 * 122.83464 * 8 6 5 22 22 C 1.54268 * 106.59992 * 0.02562 * 6 5 4 23 23 H 1.09003 * 109.47221 * 296.67227 * 1 2 3 24 24 H 1.09005 * 109.46907 * 56.66849 * 1 2 3 25 25 H 1.08995 * 109.47481 * 176.66747 * 1 2 3 26 26 H 1.09003 * 110.48391 * 322.42177 * 4 2 1 27 27 H 1.09004 * 110.48801 * 85.06718 * 4 2 1 28 28 H 1.08994 * 110.03288 * 264.32894 * 5 4 2 29 29 H 1.09000 * 110.07311 * 142.91218 * 5 4 2 30 30 H 0.97001 * 120.00331 * 179.97438 * 16 15 13 31 31 H 1.08999 * 110.49069 * 217.71506 * 22 6 5 32 32 H 1.08996 * 110.48777 * 95.06810 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0789 -0.7960 -1.2099 5 6 3.4931 -1.2269 -0.7692 6 6 3.4931 -1.2268 0.7696 7 1 4.2325 -0.5183 1.1430 8 6 3.7956 -2.6098 1.2859 9 7 3.1049 -3.6911 1.0025 10 7 3.7144 -4.7614 1.6776 11 1 3.4387 -5.6914 1.6671 12 6 4.7747 -4.2230 2.3584 13 6 5.6753 -4.9193 3.1796 14 1 6.4787 -4.3900 3.6703 15 6 5.5319 -6.3025 3.3628 16 7 4.5605 -6.9430 2.7689 17 14 6.7310 -7.2292 4.4552 18 1 6.2212 -7.2426 5.8499 19 1 6.8700 -8.6243 3.9657 20 1 8.0548 -6.5574 4.4185 21 7 4.7929 -2.9183 2.0976 22 6 2.0787 -0.7964 1.2102 23 1 -0.3634 0.4613 0.9183 24 1 -0.3633 0.5647 -0.8587 25 1 -0.3634 -1.0259 -0.0597 26 1 1.4574 -1.6699 -1.4052 27 1 2.1320 -0.1593 -2.0931 28 1 4.2326 -0.5185 -1.1425 29 1 3.7128 -2.2272 -1.1424 30 1 4.4616 -7.8996 2.8953 31 1 2.1313 -0.1595 2.0932 32 1 1.4575 -1.6705 1.4057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083791201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:57 Heat of formation + Delta-G solvation = 36.104981 kcal Electronic energy + Delta-G solvation = -14802.614087 eV Core-core repulsion = 12376.837697 eV Total energy + Delta-G solvation = -2425.776391 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87921 -37.79380 -33.97078 -31.64861 -30.09158 -29.41882 -27.97756 -25.91641 -24.73272 -21.38477 -20.12772 -19.61201 -18.10053 -17.55398 -15.71128 -15.34416 -14.85742 -14.17548 -13.46376 -13.44823 -13.16174 -12.88704 -12.57615 -11.90027 -11.58633 -11.43567 -11.37935 -10.94577 -10.72756 -10.56229 -10.38141 -10.22286 -10.19730 -10.05703 -9.78065 -9.60263 -8.16674 -8.13715 -7.88953 -7.12624 -4.85531 2.84423 2.98120 3.04688 3.50686 3.77457 4.20575 4.72164 4.95382 5.06390 5.14133 5.36109 5.54133 5.65541 5.80320 5.87048 5.91557 6.02981 6.09339 6.18400 6.26843 6.36869 6.40562 6.42926 6.69980 6.76678 6.79675 6.97301 7.12201 7.64510 8.09589 8.26426 8.52357 8.58758 9.43422 9.93857 10.19675 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.069517 B = 0.006065 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.685205 B = 4615.683207 C = 4693.633829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.111 4.111 6 C 0.010 3.990 7 H 0.082 0.918 8 C 0.219 3.781 9 N -0.403 5.403 10 N -0.509 5.509 11 H 0.438 0.562 12 C 0.409 3.591 13 C -0.428 4.428 14 H 0.102 0.898 15 C 0.073 3.927 16 N -0.836 5.836 17 Si 0.944 3.056 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.258 1.258 21 N -0.632 5.632 22 C -0.107 4.107 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.292 0.708 31 H 0.060 0.940 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 5.996 -3.109 7.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.011 4.011 7 H 0.101 0.899 8 C -0.065 4.065 9 N -0.239 5.239 10 N -0.234 5.234 11 H 0.292 0.708 12 C 0.155 3.845 13 C -0.469 4.469 14 H 0.120 0.880 15 C -0.144 4.144 16 N -0.470 5.470 17 Si 0.768 3.232 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.182 1.182 21 N -0.370 5.370 22 C -0.145 4.145 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.973 6.029 -3.490 8.020 hybrid contribution 0.426 -1.348 0.591 1.533 sum -3.547 4.681 -2.899 6.549 Atomic orbital electron populations 1.21741 0.95413 1.01793 1.00934 1.22102 0.95034 0.98803 0.95654 0.90984 1.22387 0.96591 0.99342 0.96895 1.22130 0.96482 1.01691 0.94680 1.19841 0.97033 0.89939 0.94297 0.89930 1.23307 0.92299 0.94654 0.96212 1.77541 1.25043 0.95253 1.26045 1.48687 1.24697 1.10077 1.39987 0.70757 1.20794 0.86912 0.87133 0.89671 1.18670 1.11663 0.91562 1.25031 0.88011 1.26043 0.95716 0.97716 0.94949 1.68750 1.28962 1.11577 1.37680 0.85709 0.80267 0.77898 0.79369 1.19157 1.20085 1.18168 1.70721 1.27273 1.12841 1.26196 1.22470 0.95524 0.99678 0.96853 0.92989 0.93161 0.92540 0.91494 0.92389 0.92220 0.91366 0.89639 0.92104 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.28 37.15 0.34 -1.36 16 2 C -0.10 -1.34 3.50 -88.62 -0.31 -1.65 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.65 6.27 -25.07 -0.16 -1.81 16 5 C -0.11 -1.91 6.44 -25.61 -0.16 -2.07 16 6 C 0.01 0.20 3.44 -90.65 -0.31 -0.11 16 7 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 8 C 0.22 5.54 6.33 -157.15 -0.99 4.55 16 9 N -0.40 -10.70 12.51 32.36 0.40 -10.29 16 10 N -0.51 -14.13 7.16 31.10 0.22 -13.91 16 11 H 0.44 11.85 6.38 -182.33 -1.16 10.69 16 12 C 0.41 11.73 7.67 -155.88 -1.20 10.54 16 13 C -0.43 -11.51 9.47 -38.02 -0.36 -11.87 16 14 H 0.10 2.64 7.85 -52.48 -0.41 2.23 16 15 C 0.07 1.76 5.50 -17.30 -0.10 1.67 16 16 N -0.84 -20.55 10.72 55.56 0.60 -19.95 16 17 Si 0.94 18.14 29.56 -169.99 -5.03 13.12 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 N -0.63 -17.79 11.24 -10.11 -0.11 -17.90 16 22 C -0.11 -1.83 5.80 -25.05 -0.15 -1.97 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 30 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.43 7.59 -51.93 -0.39 1.04 16 LS Contribution 267.04 15.07 4.02 4.02 Total: -1.00 -29.24 267.04 -8.58 -37.81 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.29 Total: 11.21 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.39 Total: -4.10 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 1.11 Total: -62.06 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.24 -8.58 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083791201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.915 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds