Wall clock time and date at job start Mon Mar 30 2020 03:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.81778 * 2 1 4 4 C 1.54882 * 110.75952 * 236.65892 * 2 1 3 5 5 C 1.54268 * 104.19992 * 203.74429 * 4 2 1 6 6 C 1.53876 * 106.59607 * 23.60931 * 5 4 2 7 7 H 1.08998 * 110.03805 * 240.71854 * 6 5 4 8 8 C 1.50698 * 110.03304 * 119.28364 * 6 5 4 9 9 N 1.31397 * 125.16050 * 302.52741 * 8 6 5 10 10 N 1.40451 * 107.17954 * 179.90934 * 9 8 6 11 11 H 0.97006 * 127.01593 * 180.11600 * 10 9 8 12 12 C 1.37020 * 105.97202 * 0.34963 * 10 9 8 13 13 C 1.40372 * 126.31764 * 179.77197 * 12 10 9 14 14 H 1.08003 * 120.00054 * 180.02562 * 13 12 10 15 15 C 1.40264 * 119.99929 * 0.02562 * 13 12 10 16 16 N 1.30634 * 120.00475 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99737 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46873 * 90.00333 * 17 15 13 19 19 H 1.48496 * 109.47374 * 209.99897 * 17 15 13 20 20 H 1.48498 * 109.47347 * 330.00567 * 17 15 13 21 21 N 1.32239 * 125.15637 * 122.83464 * 8 6 5 22 22 C 1.54268 * 106.59992 * 0.02562 * 6 5 4 23 23 H 1.09003 * 109.47221 * 296.67227 * 1 2 3 24 24 H 1.09005 * 109.46907 * 56.66849 * 1 2 3 25 25 H 1.08995 * 109.47481 * 176.66747 * 1 2 3 26 26 H 1.09003 * 110.48391 * 322.42177 * 4 2 1 27 27 H 1.09004 * 110.48801 * 85.06718 * 4 2 1 28 28 H 1.08994 * 110.03288 * 264.32894 * 5 4 2 29 29 H 1.09000 * 110.07311 * 142.91218 * 5 4 2 30 30 H 0.97001 * 120.00331 * 179.97438 * 16 15 13 31 31 H 1.08999 * 110.49069 * 217.71506 * 22 6 5 32 32 H 1.08996 * 110.48777 * 95.06810 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0789 -0.7960 -1.2099 5 6 3.4931 -1.2269 -0.7692 6 6 3.4931 -1.2268 0.7696 7 1 4.2325 -0.5183 1.1430 8 6 3.7956 -2.6098 1.2859 9 7 3.1049 -3.6911 1.0025 10 7 3.7144 -4.7614 1.6776 11 1 3.4387 -5.6914 1.6671 12 6 4.7747 -4.2230 2.3584 13 6 5.6753 -4.9193 3.1796 14 1 6.4787 -4.3900 3.6703 15 6 5.5319 -6.3025 3.3628 16 7 4.5605 -6.9430 2.7689 17 14 6.7310 -7.2292 4.4552 18 1 6.2212 -7.2426 5.8499 19 1 6.8700 -8.6243 3.9657 20 1 8.0548 -6.5574 4.4185 21 7 4.7929 -2.9183 2.0976 22 6 2.0787 -0.7964 1.2102 23 1 -0.3634 0.4613 0.9183 24 1 -0.3633 0.5647 -0.8587 25 1 -0.3634 -1.0259 -0.0597 26 1 1.4574 -1.6699 -1.4052 27 1 2.1320 -0.1593 -2.0931 28 1 4.2326 -0.5185 -1.1425 29 1 3.7128 -2.2272 -1.1424 30 1 4.4616 -7.8996 2.8953 31 1 2.1313 -0.1595 2.0932 32 1 1.4575 -1.6705 1.4057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083791201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:56 Heat of formation + Delta-G solvation = 18.516458 kcal Electronic energy + Delta-G solvation = -14803.376783 eV Core-core repulsion = 12376.837697 eV Total energy + Delta-G solvation = -2426.539086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86942 -39.16501 -35.90385 -33.16185 -32.11752 -31.05661 -29.48614 -27.88424 -26.01974 -23.17759 -21.92110 -20.80804 -19.99911 -19.45429 -17.48147 -17.03930 -16.41797 -15.73230 -15.39351 -14.96771 -14.54786 -14.28453 -13.81743 -13.46190 -13.41497 -13.04503 -12.88585 -12.38115 -12.17257 -11.91684 -11.87351 -11.65628 -11.58100 -11.44450 -11.36108 -11.29016 -10.27554 -10.23898 -9.91342 -9.01173 -6.92114 1.15510 1.39950 1.57653 1.67107 2.15114 2.31703 2.76170 3.25144 3.63307 3.71319 3.83077 4.21280 4.43274 4.49028 4.62702 4.66461 4.77558 4.78474 4.89239 4.97939 5.05283 5.11865 5.15370 5.20076 5.36813 5.39565 5.50548 5.62479 5.65054 6.05954 6.22516 6.52925 6.58332 7.33057 8.03398 8.16385 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.069517 B = 0.006065 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.685205 B = 4615.683207 C = 4693.633829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 H 0.098 0.902 4 C -0.109 4.109 5 C -0.107 4.107 6 C 0.002 3.998 7 H 0.087 0.913 8 C 0.219 3.781 9 N -0.423 5.423 10 N -0.524 5.524 11 H 0.436 0.564 12 C 0.380 3.620 13 C -0.459 4.459 14 H 0.102 0.898 15 C 0.037 3.963 16 N -0.851 5.851 17 Si 1.025 2.975 18 H -0.257 1.257 19 H -0.261 1.261 20 H -0.255 1.255 21 N -0.665 5.665 22 C -0.104 4.104 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.307 0.693 31 H 0.070 0.930 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 6.578 -3.079 7.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 H 0.116 0.884 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.019 4.019 7 H 0.105 0.895 8 C -0.065 4.065 9 N -0.258 5.258 10 N -0.250 5.250 11 H 0.290 0.710 12 C 0.127 3.873 13 C -0.500 4.500 14 H 0.120 0.880 15 C -0.178 4.178 16 N -0.483 5.483 17 Si 0.843 3.157 18 H -0.182 1.182 19 H -0.185 1.185 20 H -0.178 1.178 21 N -0.404 5.404 22 C -0.143 4.143 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.847 6.618 -3.487 8.412 hybrid contribution 0.376 -1.583 0.589 1.730 sum -3.472 5.035 -2.898 6.768 Atomic orbital electron populations 1.21723 0.94005 1.01412 1.02507 1.22098 0.96141 0.99198 0.92963 0.88375 1.22373 0.94249 0.99479 0.98499 1.22114 0.99259 1.00634 0.92606 1.20179 0.98710 0.86849 0.96137 0.89451 1.24323 0.90889 0.96541 0.94724 1.77487 1.25833 0.95518 1.26925 1.48684 1.25147 1.10254 1.40911 0.71039 1.21354 0.87646 0.87841 0.90411 1.19041 1.11965 0.93213 1.25811 0.87967 1.27141 0.97377 0.97536 0.95784 1.68752 1.29537 1.12736 1.37304 0.84548 0.77366 0.76620 0.77200 1.18173 1.18477 1.17816 1.70744 1.28805 1.13000 1.27843 1.22443 0.93498 0.99228 0.99111 0.92143 0.90764 0.94063 0.93013 0.89090 0.89708 0.94660 0.88141 0.91150 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.28 71.98 0.67 -2.34 16 2 C -0.09 -2.13 3.50 -9.50 -0.03 -2.17 16 3 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 4 C -0.11 -2.91 6.27 31.67 0.20 -2.71 16 5 C -0.11 -3.61 6.44 31.32 0.20 -3.41 16 6 C 0.00 0.09 3.44 -10.81 -0.04 0.06 16 7 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 8 C 0.22 11.45 6.33 138.73 0.88 12.33 16 9 N -0.42 -23.37 12.51 -51.54 -0.64 -24.02 16 10 N -0.52 -30.31 7.16 -55.51 -0.40 -30.71 16 11 H 0.44 24.51 6.38 -213.09 -1.36 23.15 16 12 C 0.38 22.60 7.67 133.83 1.03 23.62 16 13 C -0.46 -25.25 9.47 23.28 0.22 -25.03 16 14 H 0.10 5.42 7.85 -2.91 -0.02 5.40 16 15 C 0.04 1.78 5.50 85.36 0.47 2.25 16 16 N -0.85 -41.82 10.72 21.88 0.23 -41.58 16 17 Si 1.02 36.00 29.56 68.60 2.03 38.03 16 18 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 19 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 20 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 21 N -0.66 -38.77 11.24 -185.91 -2.09 -40.86 16 22 C -0.10 -3.52 5.80 31.68 0.18 -3.33 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.04 1.01 8.09 -2.39 -0.02 0.99 16 26 H 0.05 1.54 8.01 -2.39 -0.02 1.52 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.03 1.40 7.60 -2.39 -0.02 1.38 16 30 H 0.31 13.22 8.29 -92.71 -0.77 12.45 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.75 7.59 -2.39 -0.02 1.73 16 Total: -1.00 -65.62 267.04 2.67 -62.95 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.24 Total: 36.92 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.78 Total: -0.73 kcal Atomic # 7 Polarization: -134.27 SS G_CDS: -2.90 Total: -137.17 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -65.62 2.67 -62.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083791201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.471 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds