Wall clock time and date at job start Mon Mar 30 2020 03:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 110.53367 * 2 1 4 4 C 1.54463 * 110.65944 * 122.62566 * 2 1 3 5 5 C 1.53877 * 106.68421 * 142.05478 * 4 2 1 6 6 C 1.54265 * 106.59605 * 0.15594 * 5 4 2 7 7 H 1.09006 * 110.48556 * 95.06998 * 6 5 4 8 8 C 1.50702 * 110.59970 * 217.65480 * 6 5 4 9 9 N 1.31395 * 125.15712 * 54.86682 * 8 6 5 10 10 N 1.40455 * 107.18266 * 180.02562 * 9 8 6 11 11 H 0.97005 * 127.01469 * 180.02562 * 10 9 8 12 12 C 1.37020 * 105.96479 * 0.02562 * 10 9 8 13 13 C 1.40369 * 126.31328 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00092 * 179.97438 * 13 12 10 15 15 C 1.40272 * 120.00233 * 359.97438 * 13 12 10 16 16 N 1.30646 * 119.99731 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00074 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47337 * 59.99996 * 17 15 13 19 19 H 1.48503 * 109.46812 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47055 * 299.99891 * 17 15 13 21 21 N 1.32232 * 125.16026 * 234.56746 * 8 6 5 22 22 C 1.54887 * 104.20056 * 336.39127 * 6 5 4 23 23 H 1.09001 * 109.46687 * 182.60851 * 1 2 3 24 24 H 1.08995 * 109.46703 * 302.61251 * 1 2 3 25 25 H 1.09003 * 109.46767 * 62.61469 * 1 2 3 26 26 H 1.08999 * 109.85715 * 22.81273 * 4 2 1 27 27 H 1.09003 * 110.15968 * 261.45904 * 4 2 1 28 28 H 1.08995 * 110.02951 * 240.87549 * 5 4 2 29 29 H 1.08993 * 110.03177 * 119.44086 * 5 4 2 30 30 H 0.97000 * 119.99503 * 179.97438 * 16 15 13 31 31 H 1.09002 * 110.75856 * 156.25785 * 22 6 5 32 32 H 1.09006 * 110.75640 * 279.44771 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0750 -0.7792 1.2172 5 6 3.3186 -1.5443 0.7313 6 6 3.4905 -1.2020 -0.7630 7 1 4.1917 -0.3767 -0.8871 8 6 3.9581 -2.4099 -1.5333 9 7 3.3562 -3.5778 -1.5475 10 7 4.1087 -4.4223 -2.3802 11 1 3.9216 -5.3500 -2.5935 12 6 5.1608 -3.6684 -2.8297 13 6 6.1806 -4.0963 -3.6942 14 1 6.9646 -3.4126 -3.9846 15 6 6.1815 -5.4118 -4.1809 16 7 5.2335 -6.2391 -3.8292 17 14 7.5383 -5.9810 -5.3318 18 1 8.8519 -5.8491 -4.6520 19 1 7.3114 -7.4016 -5.7002 20 1 7.5298 -5.1446 -6.5588 21 7 5.0333 -2.4537 -2.3018 22 6 2.0722 -0.7820 -1.2222 23 1 -0.3633 -1.0266 0.0468 24 1 -0.3632 0.5539 0.8656 25 1 -0.3633 0.4727 -0.9125 26 1 1.3215 -1.4805 1.5755 27 1 2.3498 -0.0876 2.0137 28 1 3.1684 -2.6169 0.8538 29 1 4.1968 -1.2235 1.2914 30 1 5.2339 -7.1487 -4.1661 31 1 2.1252 -0.1382 -2.1002 32 1 1.4562 -1.6583 -1.4242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083791207.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:05 Heat of formation + Delta-G solvation = 18.226078 kcal Electronic energy + Delta-G solvation = -14750.791620 eV Core-core repulsion = 12324.239943 eV Total energy + Delta-G solvation = -2426.551678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.85691 -39.16832 -35.90843 -33.16749 -32.12926 -31.06791 -29.48624 -27.88473 -25.96394 -23.26669 -21.91081 -20.73141 -20.00410 -19.48035 -17.47964 -17.03667 -16.46809 -15.66513 -15.42813 -14.99729 -14.46848 -14.21697 -13.89012 -13.49882 -13.41670 -13.03699 -12.89541 -12.34826 -12.17608 -11.99152 -11.90205 -11.67430 -11.60113 -11.44939 -11.38267 -11.19192 -10.27687 -10.24164 -9.91186 -9.00998 -6.92193 1.16535 1.40124 1.56116 1.67555 2.15235 2.30976 2.75896 3.24728 3.61990 3.73344 3.85557 4.22279 4.42552 4.46507 4.59286 4.64808 4.77052 4.80510 4.86669 4.99294 5.05293 5.10538 5.15172 5.21056 5.35223 5.40082 5.52585 5.62270 5.64000 6.05643 6.22014 6.52613 6.57969 7.33016 8.03140 8.16145 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.072958 B = 0.005897 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.691472 B = 4746.833686 C = 4803.262535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.092 0.908 4 C -0.108 4.108 5 C -0.110 4.110 6 C 0.003 3.997 7 H 0.089 0.911 8 C 0.219 3.781 9 N -0.424 5.424 10 N -0.524 5.524 11 H 0.436 0.564 12 C 0.380 3.620 13 C -0.460 4.460 14 H 0.103 0.897 15 C 0.037 3.963 16 N -0.851 5.851 17 Si 1.025 2.975 18 H -0.256 1.256 19 H -0.261 1.261 20 H -0.256 1.256 21 N -0.664 5.664 22 C -0.103 4.103 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.307 0.693 31 H 0.063 0.937 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 5.810 4.047 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.018 4.018 7 H 0.107 0.893 8 C -0.064 4.064 9 N -0.259 5.259 10 N -0.250 5.250 11 H 0.290 0.710 12 C 0.128 3.872 13 C -0.501 4.501 14 H 0.121 0.879 15 C -0.178 4.178 16 N -0.483 5.483 17 Si 0.843 3.157 18 H -0.180 1.180 19 H -0.185 1.185 20 H -0.180 1.180 21 N -0.403 5.403 22 C -0.142 4.142 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.504 5.719 4.405 8.509 hybrid contribution 0.541 -1.365 -0.834 1.688 sum -3.963 4.354 3.572 6.886 Atomic orbital electron populations 1.21765 0.93797 1.01630 1.02447 1.21989 0.96362 0.99269 0.92978 0.88977 1.22202 0.95691 0.98702 0.97920 1.22126 0.99549 0.99992 0.93195 1.20340 0.97533 0.90374 0.93599 0.89268 1.24264 0.91139 0.94748 0.96298 1.77472 1.23169 1.03609 1.21650 1.48676 1.21437 1.14393 1.40471 0.71011 1.21347 0.88653 0.85433 0.91776 1.19020 1.08167 0.98247 1.24636 0.87919 1.27148 0.99388 0.94589 0.96700 1.68755 1.32333 1.08111 1.39102 0.84592 0.76254 0.77802 0.77078 1.17960 1.18484 1.17986 1.70735 1.24888 1.21225 1.23476 1.22545 0.93545 0.99354 0.98721 0.93599 0.90758 0.92368 0.91675 0.89412 0.93870 0.91153 0.88121 0.91863 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.15 71.98 0.66 -2.23 16 2 C -0.09 -2.15 3.47 -9.65 -0.03 -2.18 16 3 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 4 C -0.11 -2.70 6.39 31.39 0.20 -2.49 16 5 C -0.11 -3.71 6.37 31.32 0.20 -3.51 16 6 C 0.00 0.10 3.39 -10.47 -0.04 0.07 16 7 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 8 C 0.22 11.48 6.65 138.74 0.92 12.40 16 9 N -0.42 -23.46 12.37 -51.55 -0.64 -24.09 16 10 N -0.52 -30.27 7.16 -55.51 -0.40 -30.67 16 11 H 0.44 24.48 6.38 -213.08 -1.36 23.12 16 12 C 0.38 22.59 7.67 133.83 1.03 23.62 16 13 C -0.46 -25.22 9.47 23.28 0.22 -25.00 16 14 H 0.10 5.42 7.85 -2.91 -0.02 5.40 16 15 C 0.04 1.78 5.50 85.36 0.47 2.25 16 16 N -0.85 -41.73 10.72 21.88 0.23 -41.50 16 17 Si 1.02 35.90 29.56 68.60 2.03 37.93 16 18 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 19 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 20 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 21 N -0.66 -38.71 11.24 -185.91 -2.09 -40.80 16 22 C -0.10 -3.49 5.73 31.88 0.18 -3.30 16 23 H 0.04 1.04 8.08 -2.39 -0.02 1.02 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.60 7.79 -2.39 -0.02 1.59 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.69 7.57 -2.39 -0.02 1.67 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.31 13.24 8.29 -92.71 -0.77 12.47 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.93 7.88 -2.38 -0.02 1.91 16 Total: -1.00 -65.22 267.02 2.71 -62.51 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.24 Total: 37.00 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 3.81 Total: -0.38 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -2.89 Total: -137.06 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -65.22 2.71 -62.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083791207.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.740 kcal (2) G-P(sol) polarization free energy of solvation -65.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds