Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47466 * 2 1 4 4 C 1.50700 * 109.46635 * 239.99290 * 2 1 3 5 5 H 1.08001 * 120.00297 * 239.99482 * 4 2 1 6 6 C 1.37878 * 119.99875 * 60.00807 * 4 2 1 7 7 N 1.31514 * 119.99899 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47211 * 59.99300 * 8 6 4 10 10 H 1.48496 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47239 * 299.99873 * 8 6 4 12 12 C 1.53006 * 109.46852 * 119.99952 * 2 1 3 13 13 C 1.53001 * 109.46835 * 299.99491 * 12 2 1 14 14 C 1.50706 * 109.46726 * 180.02562 * 13 12 2 15 15 C 1.38622 * 120.44222 * 125.00347 * 14 13 12 16 16 C 1.38581 * 118.39650 * 180.02562 * 15 14 13 17 17 N 1.32353 * 119.10338 * 359.97438 * 16 15 14 18 18 C 1.31783 * 120.81962 * 0.02562 * 17 16 15 19 19 N 1.31813 * 121.75619 * 359.71735 * 18 17 16 20 20 H 1.09006 * 109.46940 * 300.00132 * 1 2 3 21 21 H 1.09002 * 109.46968 * 60.00100 * 1 2 3 22 22 H 1.08993 * 109.47427 * 180.02562 * 1 2 3 23 23 H 1.00893 * 111.00170 * 56.04530 * 3 2 1 24 24 H 1.00898 * 110.99966 * 180.02562 * 3 2 1 25 25 H 0.96998 * 119.99632 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46987 * 179.97438 * 12 2 1 27 27 H 1.09000 * 109.47102 * 59.99443 * 12 2 1 28 28 H 1.08999 * 109.47230 * 60.00274 * 13 12 2 29 29 H 1.09000 * 109.47236 * 299.99870 * 13 12 2 30 30 H 1.07992 * 120.80448 * 0.02562 * 15 14 13 31 31 H 1.07996 * 120.44542 * 180.02562 * 16 15 14 32 32 H 1.07996 * 119.11931 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 2.0322 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3223 -1.1199 -4.0079 9 1 1.8278 -2.5201 -4.0079 10 1 1.8268 -0.4204 -5.2204 11 1 3.8073 -1.1195 -4.0077 12 6 2.0400 -0.7213 1.2493 13 6 1.5300 0.0001 2.4985 14 6 2.0328 -0.7100 3.7290 15 6 2.7431 -0.0185 4.6980 16 6 3.1860 -0.7135 5.8122 17 7 2.9174 -2.0055 5.9137 18 6 2.2391 -2.6301 4.9722 19 7 1.7980 -2.0007 3.9014 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.6443 1.9012 0.7813 24 1 3.0284 1.4118 -0.0004 25 1 0.7083 1.1607 -3.4844 26 1 3.1300 -0.7217 1.2491 27 1 1.6765 -1.7489 1.2494 28 1 0.4400 0.0002 2.4985 29 1 1.8935 1.0277 2.4985 30 1 2.9465 1.0363 4.5874 31 1 3.7419 -0.2074 6.5875 32 1 2.0351 -3.6848 5.0833 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084350291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = 42.302727 kcal Electronic energy + Delta-G solvation = -14765.590255 eV Core-core repulsion = 12340.082619 eV Total energy + Delta-G solvation = -2425.507636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90668 -36.81198 -34.10018 -32.54396 -31.61325 -29.23296 -27.39846 -25.33926 -24.52153 -24.10186 -21.88376 -18.55689 -17.43997 -16.77458 -15.95961 -15.42354 -14.91277 -14.56747 -13.97374 -13.87798 -13.52287 -13.32723 -12.71614 -12.11698 -11.93064 -11.05517 -10.88959 -10.78408 -10.68586 -10.51945 -10.34247 -10.06428 -10.00454 -9.65283 -9.40730 -9.05885 -8.76091 -8.29386 -6.92843 -5.76903 -3.94309 0.97157 1.14196 3.38009 3.42717 3.45686 3.85018 4.16180 4.22287 4.50303 4.57381 5.05627 5.12718 5.42191 5.45300 5.59435 5.77945 5.93158 6.12075 6.25046 6.47195 6.60104 6.68647 6.96439 7.05729 7.11681 7.28764 7.39987 7.90383 8.10648 8.17405 8.43702 8.75529 9.08909 9.25987 9.74391 11.22454 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049912 B = 0.006300 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.849615 B = 4443.433774 C = 4661.332361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.246 3.754 3 N -0.811 5.811 4 C -0.528 4.528 5 H 0.049 0.951 6 C 0.085 3.915 7 N -0.846 5.846 8 Si 0.880 3.120 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.280 1.280 12 C -0.128 4.128 13 C -0.080 4.080 14 C 0.193 3.807 15 C -0.233 4.233 16 C 0.143 3.857 17 N -0.536 5.536 18 C 0.292 3.708 19 N -0.513 5.513 20 H 0.006 0.994 21 H 0.089 0.911 22 H 0.028 0.972 23 H 0.293 0.707 24 H 0.316 0.684 25 H 0.253 0.747 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.164 0.836 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 -0.670 13.226 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.155 3.845 3 N -0.338 5.338 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.120 4.120 7 N -0.481 5.481 8 Si 0.708 3.292 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.168 4.168 13 C -0.118 4.118 14 C 0.047 3.953 15 C -0.255 4.255 16 C -0.022 4.022 17 N -0.251 5.251 18 C 0.004 3.996 19 N -0.227 5.227 20 H 0.025 0.975 21 H 0.107 0.893 22 H 0.048 0.952 23 H 0.105 0.895 24 H 0.127 0.873 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.163 0.837 31 H 0.181 0.819 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.536 -1.427 12.477 12.652 hybrid contribution 1.076 0.110 0.062 1.084 sum 2.612 -1.317 12.539 12.875 Atomic orbital electron populations 1.21808 0.97512 0.98893 1.00391 1.18366 0.91948 0.84499 0.89677 1.59097 1.11162 1.15887 1.47653 1.20832 1.33599 1.12036 0.90177 0.93248 1.24893 0.94527 0.94325 0.98306 1.70015 1.34537 1.21290 1.22214 0.86900 0.79226 0.79892 0.83198 1.20505 1.21427 1.20543 1.22428 0.99220 1.00886 0.94295 1.20924 1.02039 0.98123 0.90716 1.22129 0.88843 0.89646 0.94637 1.22841 1.02677 1.03052 0.96892 1.23150 0.93299 0.90044 0.95723 1.68384 1.15357 1.10506 1.30840 1.24985 0.89160 1.00715 0.84732 1.68317 1.21385 1.10025 1.22972 0.97511 0.89273 0.95241 0.89538 0.87252 0.93649 0.93951 0.91684 0.89116 0.90592 0.83725 0.81892 0.79053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.16 37.16 0.30 -2.71 16 2 C 0.25 5.76 0.57 -132.75 -0.08 5.68 16 3 N -0.81 -18.10 8.07 -0.19 0.00 -18.10 16 4 C -0.53 -14.27 8.18 -34.44 -0.28 -14.55 16 5 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 6 C 0.09 2.34 5.23 -17.82 -0.09 2.25 16 7 N -0.85 -23.84 10.80 55.43 0.60 -23.24 16 8 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 C -0.13 -2.57 4.23 -26.73 -0.11 -2.68 16 13 C -0.08 -1.31 4.96 -27.88 -0.14 -1.44 16 14 C 0.19 2.96 6.20 -82.24 -0.51 2.45 16 15 C -0.23 -2.88 9.80 -39.31 -0.39 -3.26 16 16 C 0.14 1.66 11.30 -17.20 -0.19 1.46 16 17 N -0.54 -7.19 10.44 -14.58 -0.15 -7.34 16 18 C 0.29 4.02 12.29 -92.15 -1.13 2.89 16 19 N -0.51 -8.26 10.05 -10.79 -0.11 -8.36 16 20 H 0.01 0.13 6.43 -51.93 -0.33 -0.21 16 21 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.29 5.73 7.31 -39.30 -0.29 5.44 16 24 H 0.32 6.86 8.99 -39.29 -0.35 6.50 16 25 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.41 7.99 -51.93 -0.41 0.99 16 28 H 0.09 1.53 6.43 -51.93 -0.33 1.19 16 29 H 0.08 1.11 6.56 -51.93 -0.34 0.77 16 30 H 0.14 1.41 8.01 -52.49 -0.42 0.98 16 31 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -30.18 267.38 -7.31 -37.49 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.03 Total: 9.20 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.62 Total: -9.92 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.34 Total: -57.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.18 -7.31 -37.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.789 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds