Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47466 * 2 1 4 4 C 1.50700 * 109.46635 * 239.99290 * 2 1 3 5 5 H 1.08001 * 120.00297 * 239.99482 * 4 2 1 6 6 C 1.37878 * 119.99875 * 60.00807 * 4 2 1 7 7 N 1.31514 * 119.99899 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47211 * 59.99300 * 8 6 4 10 10 H 1.48496 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47239 * 299.99873 * 8 6 4 12 12 C 1.53006 * 109.46852 * 119.99952 * 2 1 3 13 13 C 1.53001 * 109.46835 * 299.99491 * 12 2 1 14 14 C 1.50706 * 109.46726 * 180.02562 * 13 12 2 15 15 C 1.38622 * 120.44222 * 125.00347 * 14 13 12 16 16 C 1.38581 * 118.39650 * 180.02562 * 15 14 13 17 17 N 1.32353 * 119.10338 * 359.97438 * 16 15 14 18 18 C 1.31783 * 120.81962 * 0.02562 * 17 16 15 19 19 N 1.31813 * 121.75619 * 359.71735 * 18 17 16 20 20 H 1.09006 * 109.46940 * 300.00132 * 1 2 3 21 21 H 1.09002 * 109.46968 * 60.00100 * 1 2 3 22 22 H 1.08993 * 109.47427 * 180.02562 * 1 2 3 23 23 H 1.00893 * 111.00170 * 56.04530 * 3 2 1 24 24 H 1.00898 * 110.99966 * 180.02562 * 3 2 1 25 25 H 0.96998 * 119.99632 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46987 * 179.97438 * 12 2 1 27 27 H 1.09000 * 109.47102 * 59.99443 * 12 2 1 28 28 H 1.08999 * 109.47230 * 60.00274 * 13 12 2 29 29 H 1.09000 * 109.47236 * 299.99870 * 13 12 2 30 30 H 1.07992 * 120.80448 * 0.02562 * 15 14 13 31 31 H 1.07996 * 120.44542 * 180.02562 * 16 15 14 32 32 H 1.07996 * 119.11931 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 2.0322 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3223 -1.1199 -4.0079 9 1 1.8278 -2.5201 -4.0079 10 1 1.8268 -0.4204 -5.2204 11 1 3.8073 -1.1195 -4.0077 12 6 2.0400 -0.7213 1.2493 13 6 1.5300 0.0001 2.4985 14 6 2.0328 -0.7100 3.7290 15 6 2.7431 -0.0185 4.6980 16 6 3.1860 -0.7135 5.8122 17 7 2.9174 -2.0055 5.9137 18 6 2.2391 -2.6301 4.9722 19 7 1.7980 -2.0007 3.9014 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.6443 1.9012 0.7813 24 1 3.0284 1.4118 -0.0004 25 1 0.7083 1.1607 -3.4844 26 1 3.1300 -0.7217 1.2491 27 1 1.6765 -1.7489 1.2494 28 1 0.4400 0.0002 2.4985 29 1 1.8935 1.0277 2.4985 30 1 2.9465 1.0363 4.5874 31 1 3.7419 -0.2074 6.5875 32 1 2.0351 -3.6848 5.0833 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084350291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = 22.300043 kcal Electronic energy + Delta-G solvation = -14766.457637 eV Core-core repulsion = 12340.082619 eV Total energy + Delta-G solvation = -2426.375018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.92986 -38.50169 -35.38349 -33.89702 -33.22098 -30.68373 -29.19314 -27.30673 -25.88884 -25.20822 -23.20019 -20.34231 -18.48722 -18.23021 -17.58973 -16.62069 -16.33209 -15.96551 -15.75820 -15.22812 -14.96589 -14.68151 -14.25445 -13.75785 -13.53282 -12.86339 -12.69449 -12.48636 -12.23470 -12.04468 -11.98106 -11.76844 -11.44770 -11.36108 -10.79927 -10.48686 -10.32381 -10.14208 -8.69627 -7.83944 -6.07632 -0.02230 0.13682 1.44341 1.45641 1.51789 2.50751 2.83290 3.14756 3.30636 3.33446 3.57343 4.06081 4.18336 4.29724 4.35288 4.49652 4.62196 4.70479 4.85977 4.94461 4.99666 5.22774 5.32656 5.43638 5.52231 5.56970 5.79157 6.08783 6.15673 6.46340 6.78800 7.16004 7.24734 7.48373 7.64259 9.12010 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049912 B = 0.006300 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.849615 B = 4443.433774 C = 4661.332361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.241 3.759 3 N -0.820 5.820 4 C -0.547 4.547 5 H 0.035 0.965 6 C 0.044 3.956 7 N -0.866 5.866 8 Si 0.933 3.067 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.278 1.278 12 C -0.111 4.111 13 C -0.068 4.068 14 C 0.167 3.833 15 C -0.224 4.224 16 C 0.146 3.854 17 N -0.545 5.545 18 C 0.282 3.718 19 N -0.547 5.547 20 H 0.033 0.967 21 H 0.059 0.941 22 H 0.019 0.981 23 H 0.312 0.688 24 H 0.320 0.680 25 H 0.251 0.749 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.205 0.795 32 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -0.051 14.732 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.150 3.850 3 N -0.349 5.349 4 C -0.586 4.586 5 H 0.054 0.946 6 C -0.160 4.160 7 N -0.502 5.502 8 Si 0.760 3.240 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.204 1.204 12 C -0.151 4.151 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.246 4.246 16 C -0.019 4.019 17 N -0.260 5.260 18 C -0.005 4.005 19 N -0.262 5.262 20 H 0.052 0.948 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.125 0.875 24 H 0.131 0.869 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.192 0.808 31 H 0.222 0.778 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.337 -0.809 13.988 14.205 hybrid contribution 0.849 -0.094 -0.331 0.916 sum 3.186 -0.903 13.658 14.053 Atomic orbital electron populations 1.21666 0.97787 0.98167 1.00178 1.18289 0.91692 0.85175 0.89858 1.58883 1.11514 1.15466 1.48992 1.21198 1.33362 1.11975 0.92076 0.94646 1.25470 0.94863 0.95038 1.00610 1.70137 1.35337 1.22278 1.22431 0.86050 0.78657 0.78837 0.80429 1.20501 1.21057 1.20358 1.22082 0.98421 0.99621 0.95023 1.20713 1.01542 0.98744 0.89570 1.22055 0.90596 0.89913 0.95269 1.23120 1.01067 1.04387 0.95988 1.23858 0.92410 0.89444 0.96214 1.68471 1.15299 1.11597 1.30622 1.25419 0.89079 1.01718 0.84302 1.68260 1.22664 1.10902 1.24332 0.94792 0.92260 0.96200 0.87496 0.86891 0.93937 0.94781 0.93967 0.89856 0.88560 0.80750 0.77846 0.76989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.16 71.98 0.59 -5.06 16 2 C 0.24 11.27 0.57 2.79 0.00 11.27 16 3 N -0.82 -35.86 8.07 -154.52 -1.25 -37.10 16 4 C -0.55 -29.91 8.18 25.60 0.21 -29.70 16 5 H 0.04 1.98 7.74 -2.91 -0.02 1.95 16 6 C 0.04 2.42 5.23 84.66 0.44 2.86 16 7 N -0.87 -49.08 10.80 21.45 0.23 -48.85 16 8 Si 0.93 43.97 29.54 68.60 2.03 46.00 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 C -0.11 -4.45 4.23 30.60 0.13 -4.32 16 13 C -0.07 -2.12 4.96 29.85 0.15 -1.97 16 14 C 0.17 4.84 6.20 42.58 0.26 5.10 16 15 C -0.22 -4.83 9.80 22.44 0.22 -4.61 16 16 C 0.15 2.87 11.30 84.70 0.96 3.83 16 17 N -0.55 -13.33 10.44 -200.05 -2.09 -15.42 16 18 C 0.28 7.41 12.29 180.88 2.22 9.63 16 19 N -0.55 -17.19 10.05 -188.06 -1.89 -19.08 16 20 H 0.03 1.37 6.43 -2.38 -0.02 1.35 16 21 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 22 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.31 11.62 7.31 -89.70 -0.66 10.96 16 24 H 0.32 13.56 8.99 -89.70 -0.81 12.75 16 25 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.85 7.99 -2.39 -0.02 1.83 16 28 H 0.08 2.70 6.43 -2.39 -0.02 2.68 16 29 H 0.10 2.56 6.56 -2.39 -0.02 2.55 16 30 H 0.18 2.61 8.01 -2.91 -0.02 2.59 16 31 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.21 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -64.79 267.38 1.89 -62.90 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.32 Total: 24.52 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.18 Total: -12.96 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -4.99 Total: -120.46 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.79 1.89 -62.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.200 kcal (2) G-P(sol) polarization free energy of solvation -64.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds