Wall clock time and date at job start Mon Mar 30 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.53001 * 117.49910 * 248.62197 * 4 2 1 6 6 C 1.52994 * 117.50126 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 8 8 N 1.39842 * 125.70375 * 299.69644 * 7 2 1 9 9 C 1.30269 * 109.54146 * 179.80789 * 8 7 2 10 10 C 1.41804 * 108.25422 * 0.44581 * 9 8 7 11 11 C 1.41187 * 126.63407 * 179.68344 * 10 9 8 12 12 H 1.07998 * 119.99548 * 180.02562 * 11 10 9 13 13 C 1.39554 * 120.00035 * 0.04349 * 11 10 9 14 14 N 1.31195 * 120.00333 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99735 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47330 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46819 * 120.00166 * 15 13 11 18 18 H 1.48496 * 109.47266 * 240.00022 * 15 13 11 19 19 C 1.35156 * 125.70018 * 120.00378 * 7 2 1 20 20 N 1.37740 * 126.55949 * 359.97438 * 19 7 2 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09007 * 115.54675 * 34.32260 * 4 2 1 25 25 H 1.09004 * 117.49564 * 359.97438 * 5 4 2 26 26 H 1.08997 * 117.50086 * 145.01519 * 5 4 2 27 27 H 1.09000 * 117.49953 * 214.97795 * 6 4 2 28 28 H 1.09001 * 117.49780 * 359.97438 * 6 4 2 29 29 H 1.07998 * 125.87044 * 180.13544 * 9 8 7 30 30 H 0.96995 * 120.00323 * 179.97438 * 14 13 11 31 31 H 0.96992 * 119.99778 * 359.97438 * 20 19 7 32 32 H 0.97003 * 119.99143 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.7419 0.1226 2.3151 6 6 3.5550 -0.8287 1.4340 7 7 2.0183 -0.6907 -1.1961 8 7 1.7599 -2.0234 -1.5316 9 6 2.3429 -2.3095 -2.6609 10 6 3.0282 -1.1530 -3.1123 11 6 3.7938 -1.0345 -4.2927 12 1 4.2731 -0.0971 -4.5334 13 6 3.9309 -2.1284 -5.1483 14 7 3.3479 -3.2668 -4.8562 15 14 4.9432 -1.9712 -6.7103 16 1 5.4913 -0.5945 -6.8086 17 1 6.0617 -2.9474 -6.6755 18 1 4.0820 -2.2469 -7.8882 19 6 2.7986 -0.1479 -2.1570 20 7 3.2768 1.1433 -2.1933 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.4310 -1.5585 1.5902 25 1 2.8407 1.1915 2.1262 26 1 2.5947 -0.1593 3.3577 27 1 3.9425 -1.7361 1.8971 28 1 4.1884 -0.3858 0.6653 29 1 2.3138 -3.2647 -3.1640 30 1 3.4428 -4.0270 -5.4511 31 1 3.0574 1.7619 -1.4793 32 1 3.8324 1.4339 -2.9334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087579941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:21 Heat of formation + Delta-G solvation = 96.106957 kcal Electronic energy + Delta-G solvation = -15105.830659 eV Core-core repulsion = 12682.656149 eV Total energy + Delta-G solvation = -2423.174510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.44468 -37.19703 -33.45414 -33.19557 -32.12594 -28.48050 -27.49008 -24.34957 -23.29591 -22.11649 -20.91081 -19.34872 -18.48171 -16.90806 -16.11864 -15.19696 -15.13477 -14.53351 -14.32361 -13.40519 -13.18292 -12.66932 -12.32894 -11.87461 -11.49691 -11.36870 -11.24618 -11.03734 -10.86825 -10.73583 -10.36797 -10.14440 -9.94303 -9.71802 -9.58566 -9.03952 -8.55031 -7.26836 -6.43467 -6.17076 -3.59882 3.18531 3.31389 3.34657 3.59681 3.69846 4.25498 4.31676 4.61554 4.74545 5.01624 5.13902 5.20112 5.37282 5.60421 5.73271 5.75899 5.80437 5.93367 6.12696 6.20982 6.27422 6.40938 6.55315 6.95931 7.18035 7.41519 7.83126 8.01161 8.33446 8.74990 8.85234 8.98715 9.33943 9.42690 9.78517 10.84581 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044425 B = 0.007692 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.125885 B = 3639.118190 C = 3733.727140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.206 3.794 3 H 0.075 0.925 4 C -0.150 4.150 5 C -0.183 4.183 6 C -0.163 4.163 7 N -0.398 5.398 8 N -0.355 5.355 9 C 0.052 3.948 10 C -0.084 4.084 11 C -0.424 4.424 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.856 5.856 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.207 3.793 20 N -0.863 5.863 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.201 0.799 30 H 0.267 0.733 31 H 0.374 0.626 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 6.587 8.757 11.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.102 3.898 3 H 0.093 0.907 4 C -0.170 4.170 5 C -0.221 4.221 6 C -0.200 4.200 7 N -0.189 5.189 8 N -0.179 5.179 9 C -0.132 4.132 10 C -0.098 4.098 11 C -0.460 4.460 12 H 0.077 0.923 13 C -0.148 4.148 14 N -0.491 5.491 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.013 4.013 20 N -0.414 5.414 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.217 0.783 30 H 0.077 0.923 31 H 0.200 0.800 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.235 5.867 9.641 11.505 hybrid contribution 1.199 0.779 -1.434 2.025 sum -1.035 6.645 8.207 10.611 Atomic orbital electron populations 1.22053 0.94625 1.03224 1.01150 1.20169 0.94153 0.93292 0.82168 0.90702 1.22586 0.95956 1.01888 0.96531 1.23015 1.05718 0.97297 0.96052 1.22772 0.94129 1.00982 1.02103 1.47603 1.44211 1.09539 1.17592 1.76650 1.29528 0.91788 1.19897 1.24810 0.95762 1.01077 0.91595 1.17432 1.05745 0.90210 0.96393 1.18371 1.27339 0.96925 1.03402 0.92325 1.25417 0.95842 0.94923 0.98647 1.69509 1.40922 1.02052 1.36658 0.86274 0.79704 0.78379 0.82132 1.19544 1.20805 1.20794 1.18162 1.01906 0.87192 0.94046 1.40608 1.62465 1.09063 1.29253 0.92569 0.91244 0.92188 0.87515 0.89191 0.89029 0.89144 0.88815 0.78331 0.92266 0.80017 0.76635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.43 37.16 0.35 -2.00 16 2 C 0.21 3.53 3.25 -67.93 -0.22 3.31 16 3 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 4 C -0.15 -2.35 5.28 -90.62 -0.48 -2.83 16 5 C -0.18 -2.29 10.18 -26.71 -0.27 -2.56 16 6 C -0.16 -2.55 10.13 -26.71 -0.27 -2.82 16 7 N -0.40 -8.82 3.15 -53.20 -0.17 -8.99 16 8 N -0.35 -8.98 12.28 30.94 0.38 -8.60 16 9 C 0.05 1.43 10.90 -16.85 -0.18 1.25 16 10 C -0.08 -2.30 5.96 -106.54 -0.63 -2.93 16 11 C -0.42 -11.75 9.24 -37.97 -0.35 -12.10 16 12 H 0.06 1.55 7.36 -52.49 -0.39 1.16 16 13 C 0.06 1.58 5.49 -17.33 -0.10 1.48 16 14 N -0.86 -23.64 10.32 55.53 0.57 -23.07 16 15 Si 0.91 20.48 29.56 -169.99 -5.02 15.46 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C 0.21 4.89 8.06 -153.28 -1.24 3.66 16 20 N -0.86 -16.33 9.03 31.66 0.29 -16.04 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.11 1.70 8.11 -51.93 -0.42 1.28 16 25 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.20 5.68 5.76 -52.49 -0.30 5.38 16 30 H 0.27 6.85 8.30 -40.82 -0.34 6.51 16 31 H 0.37 5.84 7.62 -40.82 -0.31 5.53 16 32 H 0.40 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 272.48 15.07 4.11 4.11 Total: -1.00 -30.13 272.48 -7.43 -37.55 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -4.19 Total: 15.13 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -3.39 Total: -15.55 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 1.07 Total: -56.70 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.13 -7.43 -37.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.659 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds