Wall clock time and date at job start Mon Mar 30 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.53001 * 117.49910 * 248.62197 * 4 2 1 6 6 C 1.52994 * 117.50126 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 8 8 N 1.39842 * 125.70375 * 299.69644 * 7 2 1 9 9 C 1.30269 * 109.54146 * 179.80789 * 8 7 2 10 10 C 1.41804 * 108.25422 * 0.44581 * 9 8 7 11 11 C 1.41187 * 126.63407 * 179.68344 * 10 9 8 12 12 H 1.07998 * 119.99548 * 180.02562 * 11 10 9 13 13 C 1.39554 * 120.00035 * 0.04349 * 11 10 9 14 14 N 1.31195 * 120.00333 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99735 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47330 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46819 * 120.00166 * 15 13 11 18 18 H 1.48496 * 109.47266 * 240.00022 * 15 13 11 19 19 C 1.35156 * 125.70018 * 120.00378 * 7 2 1 20 20 N 1.37740 * 126.55949 * 359.97438 * 19 7 2 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09007 * 115.54675 * 34.32260 * 4 2 1 25 25 H 1.09004 * 117.49564 * 359.97438 * 5 4 2 26 26 H 1.08997 * 117.50086 * 145.01519 * 5 4 2 27 27 H 1.09000 * 117.49953 * 214.97795 * 6 4 2 28 28 H 1.09001 * 117.49780 * 359.97438 * 6 4 2 29 29 H 1.07998 * 125.87044 * 180.13544 * 9 8 7 30 30 H 0.96995 * 120.00323 * 179.97438 * 14 13 11 31 31 H 0.96992 * 119.99778 * 359.97438 * 20 19 7 32 32 H 0.97003 * 119.99143 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.7419 0.1226 2.3151 6 6 3.5550 -0.8287 1.4340 7 7 2.0183 -0.6907 -1.1961 8 7 1.7599 -2.0234 -1.5316 9 6 2.3429 -2.3095 -2.6609 10 6 3.0282 -1.1530 -3.1123 11 6 3.7938 -1.0345 -4.2927 12 1 4.2731 -0.0971 -4.5334 13 6 3.9309 -2.1284 -5.1483 14 7 3.3479 -3.2668 -4.8562 15 14 4.9432 -1.9712 -6.7103 16 1 5.4913 -0.5945 -6.8086 17 1 6.0617 -2.9474 -6.6755 18 1 4.0820 -2.2469 -7.8882 19 6 2.7986 -0.1479 -2.1570 20 7 3.2768 1.1433 -2.1933 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.4310 -1.5585 1.5902 25 1 2.8407 1.1915 2.1262 26 1 2.5947 -0.1593 3.3577 27 1 3.9425 -1.7361 1.8971 28 1 4.1884 -0.3858 0.6653 29 1 2.3138 -3.2647 -3.1640 30 1 3.4428 -4.0270 -5.4511 31 1 3.0574 1.7619 -1.4793 32 1 3.8324 1.4339 -2.9334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087579941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:21 Heat of formation + Delta-G solvation = 77.420716 kcal Electronic energy + Delta-G solvation = -15106.640955 eV Core-core repulsion = 12682.656149 eV Total energy + Delta-G solvation = -2423.984806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.24646 -38.52763 -35.28494 -34.97995 -33.68273 -30.25887 -29.35223 -26.20249 -24.76392 -23.23474 -22.47658 -21.20705 -20.16050 -18.71718 -17.86533 -16.95885 -16.52471 -16.12309 -15.77838 -15.14742 -14.81154 -14.51225 -13.59504 -13.34781 -13.20009 -12.92584 -12.78577 -12.56577 -12.44849 -12.40434 -12.07736 -11.69131 -11.40117 -11.25900 -11.06446 -10.98113 -10.51594 -9.13776 -8.33921 -8.14231 -5.63257 1.40636 1.47181 1.59845 1.78488 2.03772 2.43805 2.57675 2.98723 3.38759 3.58742 3.73148 3.92911 3.98146 4.14065 4.35133 4.47303 4.71461 4.74943 4.84615 4.96539 5.07233 5.15078 5.20645 5.24818 5.36943 5.45972 5.90063 6.20664 6.32775 6.77996 7.11140 7.11994 7.36993 7.50453 7.85638 8.88433 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044425 B = 0.007692 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.125885 B = 3639.118190 C = 3733.727140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.191 3.809 3 H 0.101 0.899 4 C -0.168 4.168 5 C -0.136 4.136 6 C -0.187 4.187 7 N -0.385 5.385 8 N -0.368 5.368 9 C 0.020 3.980 10 C -0.138 4.138 11 C -0.450 4.450 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.888 5.888 15 Si 0.979 3.021 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.232 3.768 20 N -0.843 5.843 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.179 0.821 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.286 9.047 10.225 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.090 3.910 3 H 0.119 0.881 4 C -0.187 4.187 5 C -0.173 4.173 6 C -0.224 4.224 7 N -0.176 5.176 8 N -0.194 5.194 9 C -0.162 4.162 10 C -0.153 4.153 11 C -0.486 4.486 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.524 5.524 15 Si 0.804 3.196 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.007 3.993 20 N -0.396 5.396 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.130 0.870 26 H 0.136 0.864 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.196 0.804 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.104 8.357 11.146 14.089 hybrid contribution 1.100 0.143 -1.696 2.027 sum -1.004 8.500 9.450 12.750 Atomic orbital electron populations 1.22007 0.93116 1.02457 1.02772 1.20747 0.95470 0.94098 0.80734 0.88137 1.22513 0.95624 1.03159 0.97391 1.23143 1.00396 0.97593 0.96186 1.22735 0.93811 1.02529 1.03353 1.48031 1.42650 1.08575 1.18387 1.76544 1.29936 0.93652 1.19269 1.24538 0.97782 1.01025 0.92855 1.17781 1.07848 0.91510 0.98114 1.18662 1.28157 0.97518 1.04261 0.91839 1.26277 0.97093 0.94516 1.01860 1.69663 1.42257 1.02713 1.37799 0.85170 0.77923 0.78602 0.77891 1.18546 1.20566 1.20511 1.18318 0.99858 0.88093 0.92989 1.40549 1.61477 1.07489 1.30094 0.93450 0.93248 0.87980 0.88160 0.87023 0.86439 0.89310 0.91144 0.80423 0.92188 0.77542 0.75935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 9.43 71.98 0.68 -3.45 16 2 C 0.19 6.06 3.25 44.99 0.15 6.21 16 3 H 0.10 2.66 6.54 -2.39 -0.02 2.65 16 4 C -0.17 -4.83 5.28 -10.79 -0.06 -4.88 16 5 C -0.14 -2.79 10.18 30.61 0.31 -2.48 16 6 C -0.19 -5.53 10.13 30.61 0.31 -5.22 16 7 N -0.39 -16.85 3.15 -322.22 -1.02 -17.86 16 8 N -0.37 -19.13 12.28 -56.02 -0.69 -19.82 16 9 C 0.02 1.16 10.90 85.81 0.94 2.10 16 10 C -0.14 -7.77 5.96 -21.11 -0.13 -7.90 16 11 C -0.45 -25.45 9.24 23.31 0.22 -25.24 16 12 H 0.06 3.37 7.36 -2.91 -0.02 3.35 16 13 C 0.01 0.30 5.49 85.11 0.47 0.77 16 14 N -0.89 -51.19 10.32 21.77 0.22 -50.97 16 15 Si 0.98 42.80 29.56 68.60 2.03 44.83 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.23 10.85 8.06 133.00 1.07 11.92 16 20 N -0.84 -30.05 9.03 -53.76 -0.49 -30.53 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.10 3.03 8.11 -2.38 -0.02 3.01 16 25 H 0.11 1.87 8.05 -2.38 -0.02 1.85 16 26 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.18 10.89 5.76 -2.91 -0.02 10.87 16 30 H 0.27 14.37 8.30 -92.71 -0.77 13.60 16 31 H 0.40 10.92 7.62 -92.71 -0.71 10.21 16 32 H 0.41 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -68.16 272.48 3.68 -64.48 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.34 Total: 38.05 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 3.95 Total: -28.17 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -1.96 Total: -119.18 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -68.16 3.68 -64.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.900 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds