Wall clock time and date at job start Mon Mar 30 2020 03:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47550 * 2 1 4 4 C 1.50706 * 109.47003 * 240.00124 * 2 1 3 5 5 H 1.07994 * 119.99670 * 274.42728 * 4 2 1 6 6 C 1.37874 * 119.99870 * 94.42510 * 4 2 1 7 7 N 1.31510 * 119.99966 * 183.92831 * 6 4 2 8 8 Si 1.86801 * 120.00015 * 3.92862 * 6 4 2 9 9 H 1.48502 * 109.46967 * 93.75956 * 8 6 4 10 10 H 1.48497 * 109.47316 * 213.75610 * 8 6 4 11 11 H 1.48495 * 109.47312 * 333.75692 * 8 6 4 12 12 N 1.46501 * 109.47285 * 120.00613 * 2 1 3 13 13 C 1.46493 * 120.00184 * 65.30110 * 12 2 1 14 14 C 1.39712 * 119.99670 * 245.30650 * 12 2 1 15 15 C 1.38990 * 120.45299 * 354.28681 * 14 12 2 16 16 N 1.31786 * 120.81738 * 180.02562 * 15 14 12 17 17 C 1.31810 * 121.87101 * 0.02562 * 16 15 14 18 18 C 1.38949 * 120.82337 * 0.02562 * 17 16 15 19 19 N 1.39701 * 120.45353 * 179.97438 * 18 17 16 20 20 C 1.39122 * 120.45159 * 174.01134 * 14 12 2 21 21 H 1.08996 * 109.47119 * 54.75521 * 1 2 3 22 22 H 1.09006 * 109.46788 * 294.76094 * 1 2 3 23 23 H 1.09001 * 109.47171 * 174.76420 * 1 2 3 24 24 H 0.97006 * 120.00468 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46990 * 90.00805 * 13 12 2 26 26 H 1.09002 * 109.47375 * 209.99574 * 13 12 2 27 27 H 1.08993 * 109.47237 * 330.00545 * 13 12 2 28 28 H 1.08008 * 119.59179 * 359.97438 * 15 14 12 29 29 H 1.08009 * 119.58920 * 180.02562 * 17 16 15 30 30 H 0.97002 * 119.99862 * 359.97438 * 19 18 17 31 31 H 0.96996 * 119.99867 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.85366 * 359.97438 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1442 -1.7845 -1.2260 6 6 2.3490 0.0110 -2.3620 7 7 2.7133 -0.6144 -3.4600 8 14 2.2604 1.8767 -2.3354 9 1 3.5982 2.4310 -2.0060 10 1 1.8345 2.3712 -3.6692 11 1 1.2784 2.3111 -1.3097 12 7 2.0184 -0.6907 1.1961 13 6 1.7628 -2.1226 1.3708 14 6 2.7278 0.0162 2.1702 15 6 3.0782 1.3448 1.9611 16 7 3.7478 2.0183 2.8749 17 6 4.1124 1.4691 4.0162 18 6 3.8012 0.1451 4.3008 19 7 4.1920 -0.4294 5.5128 20 6 3.0881 -0.5985 3.3651 21 1 -0.3633 0.5930 -0.8393 22 1 -0.3633 0.4304 0.9332 23 1 -0.3633 -1.0234 -0.0938 24 1 2.9364 -0.1069 -4.2561 25 1 2.5797 -2.6939 0.9299 26 1 1.6916 -2.3519 2.4340 27 1 0.8271 -2.3874 0.8784 28 1 2.7991 1.8311 1.0380 29 1 4.6600 2.0555 4.7394 30 1 4.6844 0.0965 6.1623 31 1 3.9710 -1.3541 5.7047 32 1 2.8263 -1.6281 3.5593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122317671.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:33 Heat of formation + Delta-G solvation = 23.433401 kcal Electronic energy + Delta-G solvation = -15053.617901 eV Core-core repulsion = 12627.292029 eV Total energy + Delta-G solvation = -2426.325872 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09610 -38.35259 -35.79200 -34.90061 -32.87555 -30.65778 -29.86906 -27.32713 -27.09256 -23.88474 -23.45031 -21.15673 -19.40083 -18.29678 -18.10678 -17.22796 -16.65426 -16.04772 -15.74375 -15.34931 -15.02011 -14.62566 -14.39042 -14.12046 -13.97945 -13.31292 -13.22308 -12.87447 -12.63628 -12.51307 -12.14952 -12.01385 -11.79883 -11.30930 -10.96909 -10.77262 -10.32329 -8.71322 -8.34581 -8.02922 -6.39391 0.65562 0.74229 1.30647 1.36463 1.42052 2.28916 2.36876 3.01829 3.09760 3.16084 3.90591 4.11296 4.21227 4.33495 4.38013 4.53105 4.65224 4.76060 4.80843 4.84278 4.98625 5.07062 5.19789 5.30694 5.44807 5.56192 5.67835 6.11362 6.45680 6.57285 6.67774 6.79401 7.06464 7.27925 7.37614 8.81592 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034412 B = 0.009111 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.471140 B = 3072.460320 C = 3468.957884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.230 3.770 3 H 0.050 0.950 4 C -0.521 4.521 5 H 0.044 0.956 6 C 0.024 3.976 7 N -0.940 5.940 8 Si 0.921 3.079 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.237 1.237 12 N -0.606 5.606 13 C 0.102 3.898 14 C 0.217 3.783 15 C -0.074 4.074 16 N -0.431 5.431 17 C -0.061 4.061 18 C 0.224 3.776 19 N -0.850 5.850 20 C -0.262 4.262 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.267 0.733 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.169 0.831 30 H 0.412 0.588 31 H 0.408 0.592 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 0.247 16.998 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.560 4.560 5 H 0.062 0.938 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.745 3.255 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.160 1.160 12 N -0.311 5.311 13 C -0.040 4.040 14 C 0.107 3.893 15 C -0.238 4.238 16 N -0.139 5.139 17 C -0.226 4.226 18 C 0.114 3.886 19 N -0.391 5.391 20 C -0.298 4.298 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.186 0.814 30 H 0.243 0.757 31 H 0.238 0.762 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.342 1.022 16.459 16.495 hybrid contribution 0.074 -0.456 -0.460 0.652 sum -0.268 0.567 15.999 16.012 Atomic orbital electron populations 1.22140 0.96566 1.01435 1.00059 1.19233 0.92177 0.93281 0.82518 0.93230 1.21402 1.43587 0.94682 0.96286 0.93777 1.25721 0.94013 1.02821 0.94955 1.70013 1.47365 1.37782 1.02767 0.86124 0.79786 0.80978 0.78618 1.20102 1.20417 1.16034 1.47098 1.56213 1.08602 1.19231 1.21514 1.00558 0.80347 1.01618 1.18871 0.89536 0.92020 0.88908 1.21874 1.08772 0.92594 1.00533 1.67163 1.07078 1.38071 1.01562 1.22264 1.10286 0.93001 0.97036 1.18513 0.90481 0.92428 0.87167 1.42254 1.64125 1.16417 1.16261 1.20566 1.12470 1.02387 0.94356 0.92941 0.93268 0.92748 0.92346 0.95067 0.89587 0.91557 0.85666 0.81433 0.75731 0.76155 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 9.16 71.98 0.66 -5.08 16 2 C 0.23 10.57 2.18 44.25 0.10 10.67 16 3 H 0.05 2.35 2.37 -2.39 -0.01 2.35 16 4 C -0.52 -28.70 8.77 25.60 0.22 -28.48 16 5 H 0.04 2.67 7.48 -2.91 -0.02 2.65 16 6 C 0.02 1.36 5.47 84.65 0.46 1.82 16 7 N -0.94 -57.61 13.96 21.45 0.30 -57.32 16 8 Si 0.92 43.71 27.15 68.60 1.86 45.57 16 9 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.24 -10.30 6.46 99.48 0.64 -9.65 16 12 N -0.61 -24.69 2.89 -701.96 -2.03 -26.72 16 13 C 0.10 3.51 9.21 127.77 1.18 4.68 16 14 C 0.22 8.41 6.55 38.28 0.25 8.66 16 15 C -0.07 -3.09 10.48 84.88 0.89 -2.20 16 16 N -0.43 -16.59 10.35 -194.71 -2.01 -18.60 16 17 C -0.06 -1.84 11.05 84.87 0.94 -0.90 16 18 C 0.22 5.98 6.78 38.28 0.26 6.24 16 19 N -0.85 -13.54 9.10 -51.17 -0.47 -14.00 16 20 C -0.26 -8.10 9.22 22.71 0.21 -7.89 16 21 H 0.05 2.09 8.05 -2.39 -0.02 2.07 16 22 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.05 2.09 7.07 -2.39 -0.02 2.08 16 24 H 0.27 15.41 8.31 -92.70 -0.77 14.63 16 25 H 0.03 1.14 8.13 -2.39 -0.02 1.12 16 26 H 0.09 2.27 6.04 -2.39 -0.01 2.26 16 27 H 0.07 2.24 6.82 -2.39 -0.02 2.23 16 28 H 0.13 5.62 5.75 -2.91 -0.02 5.60 16 29 H 0.17 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.41 4.50 8.85 -92.71 -0.82 3.67 16 31 H 0.41 4.90 8.85 -92.71 -0.82 4.08 16 32 H 0.15 3.78 6.15 -2.91 -0.02 3.76 16 Total: -1.00 -68.01 263.06 2.27 -65.73 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -0.55 Total: 17.80 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.17 Total: -12.47 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -4.21 Total: -116.64 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.86 Total: 45.57 kcal Total: -68.01 2.27 -65.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122317671.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.166 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds