Wall clock time and date at job start Mon Mar 30 2020 02:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32276 * 119.90656 * 2 1 4 4 C 1.31915 * 120.08948 * 180.25531 * 3 2 1 5 5 C 1.39342 * 119.88952 * 359.73288 * 4 3 2 6 6 N 1.38993 * 120.09370 * 180.02562 * 5 4 3 7 7 C 1.46500 * 120.00310 * 4.97783 * 6 5 4 8 8 C 1.46502 * 119.99898 * 184.97560 * 6 5 4 9 9 C 1.50699 * 109.47271 * 89.99853 * 8 6 5 10 10 H 1.08005 * 119.99648 * 0.02562 * 9 8 6 11 11 C 1.37883 * 120.00542 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99235 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00241 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47299 * 59.99551 * 13 11 9 15 15 H 1.48496 * 109.47112 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46975 * 300.00000 * 13 11 9 17 17 N 1.32654 * 119.80972 * 359.97438 * 5 4 3 18 18 C 1.32252 * 119.90777 * 0.02562 * 17 5 4 19 19 C 1.50706 * 119.94230 * 179.97438 * 18 17 5 20 20 H 1.08999 * 109.46895 * 270.26892 * 1 2 3 21 21 H 1.08997 * 109.47210 * 30.26565 * 1 2 3 22 22 H 1.08995 * 109.47263 * 150.27013 * 1 2 3 23 23 H 1.07995 * 120.05623 * 179.71125 * 4 3 2 24 24 H 1.08993 * 109.46879 * 89.99874 * 7 6 5 25 25 H 1.09000 * 109.46807 * 210.00260 * 7 6 5 26 26 H 1.09001 * 109.46707 * 329.99900 * 7 6 5 27 27 H 1.08996 * 109.47399 * 209.99791 * 8 6 5 28 28 H 1.09005 * 109.47146 * 330.00459 * 8 6 5 29 29 H 0.97003 * 119.99084 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.46953 * 89.99910 * 19 18 17 31 31 H 1.09000 * 109.47318 * 209.99508 * 19 18 17 32 32 H 1.09000 * 109.47161 * 330.00138 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1665 1.1466 0.0000 4 6 3.4857 1.1508 -0.0051 5 6 4.1839 -0.0550 -0.0048 6 7 5.5738 -0.0555 -0.0096 7 6 6.3072 1.2084 0.0951 8 6 6.3055 -1.3200 -0.1194 9 6 6.5515 -1.6335 -1.5728 10 1 6.1985 -0.9582 -2.3381 11 6 7.2271 -2.7825 -1.9255 12 7 7.6574 -3.6046 -0.9934 13 14 7.5327 -3.1707 -3.7269 14 1 8.3343 -2.0809 -4.3391 15 1 8.2731 -4.4531 -3.8383 16 1 6.2327 -3.2871 -4.4356 17 7 3.5183 -1.2025 0.0010 18 6 2.1958 -1.1976 0.0061 19 6 1.4388 -2.5008 0.0122 20 1 -0.3633 0.0048 1.0277 21 1 -0.3633 0.8876 -0.5179 22 1 -0.3633 -0.8923 -0.5096 23 1 4.0235 2.0873 -0.0098 24 1 6.4926 1.4349 1.1450 25 1 7.2577 1.1215 -0.4313 26 1 5.7169 2.0089 -0.3506 27 1 7.2597 -1.2340 0.4002 28 1 5.7176 -2.1202 0.3304 29 1 8.1324 -4.4131 -1.2416 30 1 1.2603 -2.8124 1.0414 31 1 0.4847 -2.3692 -0.4982 32 1 2.0239 -3.2632 -0.5020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169245477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:47 Heat of formation + Delta-G solvation = 29.495111 kcal Electronic energy + Delta-G solvation = -14872.604473 eV Core-core repulsion = 12446.541457 eV Total energy + Delta-G solvation = -2426.063016 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.94042 -38.10741 -35.24442 -34.97262 -33.71929 -30.20213 -29.56218 -28.04033 -26.62622 -24.53285 -23.61339 -21.85675 -18.85619 -18.51667 -17.91902 -16.73283 -16.41223 -16.29995 -15.29732 -15.00903 -14.78150 -14.06651 -13.79491 -13.77481 -13.49541 -13.35531 -13.33860 -13.09318 -12.72979 -12.57225 -12.43636 -12.16961 -12.08526 -11.98186 -11.60084 -10.63928 -10.45915 -9.79030 -8.50881 -8.08096 -6.36421 0.14377 0.49859 1.34997 1.37539 1.45645 2.17028 2.38948 2.93916 3.07033 3.45249 3.49433 3.70207 4.14106 4.22760 4.35214 4.50297 4.65865 4.69388 4.75704 4.87706 4.93042 5.00532 5.11448 5.12391 5.17359 5.27414 5.59683 5.71323 6.03404 6.15437 6.36494 6.74417 6.81357 7.23327 7.34323 8.84252 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.008409 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.903986 B = 3329.052328 C = 3813.698584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.023 4.023 3 N -0.415 5.415 4 C -0.037 4.037 5 C 0.347 3.653 6 N -0.599 5.599 7 C 0.093 3.907 8 C 0.271 3.729 9 C -0.539 4.539 10 H 0.045 0.955 11 C 0.013 3.987 12 N -0.926 5.926 13 Si 0.963 3.037 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.278 1.278 17 N -0.533 5.533 18 C 0.118 3.882 19 C -0.099 4.099 20 H 0.085 0.915 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.184 0.816 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.267 0.733 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.027 6.815 1.850 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.165 4.165 3 N -0.129 5.129 4 C -0.206 4.206 5 C 0.108 3.892 6 N -0.309 5.309 7 C -0.049 4.049 8 C 0.149 3.851 9 C -0.578 4.578 10 H 0.063 0.937 11 C -0.187 4.187 12 N -0.566 5.566 13 Si 0.787 3.213 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.203 1.203 17 N -0.257 5.257 18 C -0.025 4.025 19 C -0.157 4.157 20 H 0.103 0.897 21 H 0.092 0.908 22 H 0.114 0.886 23 H 0.200 0.800 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.664 6.672 1.894 12.721 hybrid contribution 0.872 -0.501 -0.776 1.271 sum -9.792 6.171 1.118 11.628 Atomic orbital electron populations 1.20611 0.85302 1.04147 1.03707 1.22180 0.99701 0.88284 1.06381 1.68016 1.07806 1.29856 1.07211 1.23216 0.90723 0.97446 1.09194 1.19711 0.86826 0.90889 0.91793 1.46967 1.00905 1.09086 1.73970 1.21848 0.97057 0.84019 1.01990 1.18753 0.89998 0.80859 0.95465 1.21638 1.36145 1.06950 0.93054 0.93652 1.25763 0.95186 0.95602 1.02100 1.70039 1.38945 1.12938 1.34640 0.85549 0.78209 0.77913 0.79609 1.19033 1.20135 1.20339 1.67957 1.09677 1.29322 1.18712 1.22486 0.88801 0.98437 0.92768 1.20882 0.99687 0.90819 1.04282 0.89654 0.90848 0.88559 0.79969 0.91610 0.91103 0.89499 0.96748 0.96816 0.92394 0.88663 0.86736 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.78 71.24 0.70 -0.98 16 2 C -0.02 -0.75 6.78 42.47 0.29 -0.46 16 3 N -0.42 -14.64 10.41 -182.75 -1.90 -16.55 16 4 C -0.04 -1.36 10.43 84.95 0.89 -0.48 16 5 C 0.35 15.09 7.37 133.04 0.98 16.07 16 6 N -0.60 -26.70 2.97 -732.78 -2.18 -28.88 16 7 C 0.09 3.05 10.29 127.77 1.31 4.37 16 8 C 0.27 14.69 5.23 85.63 0.45 15.14 16 9 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 10 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 11 C 0.01 0.73 5.46 84.66 0.46 1.19 16 12 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 13 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 N -0.53 -24.37 9.18 -180.74 -1.66 -26.03 16 18 C 0.12 4.29 6.78 42.48 0.29 4.58 16 19 C -0.10 -2.67 9.78 71.24 0.70 -1.97 16 20 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.10 1.54 5.93 -2.39 -0.01 1.53 16 23 H 0.18 5.40 6.04 -2.91 -0.02 5.38 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 26 H 0.09 2.32 6.00 -2.39 -0.01 2.30 16 27 H 0.01 0.81 8.07 -2.39 -0.02 0.79 16 28 H 0.01 0.83 7.32 -2.38 -0.02 0.82 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.11 2.14 5.92 -2.39 -0.01 2.13 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.27 272.18 3.99 -67.28 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.11 Total: 6.02 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.30 Total: 6.53 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -5.45 Total: -126.79 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.27 3.99 -67.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169245477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.774 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds