Wall clock time and date at job start Mon Mar 30 2020 02:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31954 * 120.05269 * 2 1 4 4 C 1.32238 * 120.08617 * 179.97438 * 3 2 1 5 5 C 1.38209 * 120.18870 * 0.02562 * 4 3 2 6 6 N 1.32221 * 120.10249 * 359.70399 * 5 4 3 7 7 C 1.32672 * 119.91194 * 0.55301 * 6 5 4 8 8 N 1.39003 * 120.09545 * 179.74998 * 7 6 5 9 9 C 1.46895 * 111.00283 * 68.57258 * 8 7 6 10 10 C 1.46905 * 110.99734 * 304.62304 * 8 7 6 11 11 H 1.09005 * 109.47064 * 64.47535 * 10 8 7 12 12 C 1.53003 * 109.47073 * 304.48211 * 10 8 7 13 13 C 1.50699 * 109.47502 * 184.47841 * 10 8 7 14 14 H 1.08003 * 119.99704 * 0.02562 * 13 10 8 15 15 C 1.37873 * 120.00043 * 179.71916 * 13 10 8 16 16 N 1.31511 * 120.00206 * 0.28234 * 15 13 10 17 17 Si 1.86799 * 119.99841 * 180.27533 * 15 13 10 18 18 H 1.48505 * 109.47008 * 60.00724 * 17 15 13 19 19 H 1.48504 * 109.47351 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47468 * 300.00873 * 17 15 13 21 21 H 1.08995 * 109.47027 * 271.44831 * 1 2 3 22 22 H 1.09007 * 109.47060 * 31.44235 * 1 2 3 23 23 H 1.08992 * 109.46930 * 151.44478 * 1 2 3 24 24 H 1.07998 * 119.90535 * 180.02562 * 4 3 2 25 25 H 1.08000 * 119.94691 * 180.02562 * 5 4 3 26 26 H 1.09006 * 109.47656 * 290.12656 * 9 8 7 27 27 H 1.09005 * 109.47145 * 50.12338 * 9 8 7 28 28 H 1.09004 * 109.47341 * 170.12321 * 9 8 7 29 29 H 1.09001 * 109.47227 * 182.51482 * 12 10 8 30 30 H 1.09000 * 109.46903 * 302.51358 * 12 10 8 31 31 H 1.08998 * 109.47128 * 62.51820 * 12 10 8 32 32 H 0.97003 * 119.99933 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1421 0.0000 4 6 3.4902 1.1429 0.0005 5 6 4.1859 -0.0513 0.0005 6 7 3.5313 -1.2001 0.0059 7 6 2.2046 -1.2056 0.0002 8 7 1.5126 -2.4112 0.0006 9 6 1.6795 -3.1136 1.2799 10 6 1.9312 -3.2588 -1.1238 11 1 2.9789 -3.5336 -1.0014 12 6 1.7556 -2.4900 -2.4350 13 6 1.0852 -4.5055 -1.1554 14 1 0.3135 -4.6533 -0.4144 15 6 1.2923 -5.4545 -2.1338 16 7 2.2317 -5.2744 -3.0363 17 14 0.2385 -6.9963 -2.1774 18 1 -1.1877 -6.6166 -2.3421 19 1 0.6584 -7.8509 -3.3170 20 1 0.4073 -7.7474 -0.9075 21 1 -0.3633 0.0260 1.0273 22 1 -0.3633 0.8768 -0.5361 23 1 -0.3633 -0.9026 -0.4912 24 1 4.0281 2.0794 0.0009 25 1 5.2659 -0.0461 0.0014 26 1 2.7053 -3.4720 1.3666 27 1 1.4629 -2.4299 2.1008 28 1 0.9941 -3.9602 1.3217 29 1 2.0238 -3.1340 -3.2725 30 1 0.7166 -2.1764 -2.5359 31 1 2.4014 -1.6119 -2.4306 32 1 2.3776 -5.9423 -3.7245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214341388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:53 Heat of formation + Delta-G solvation = 38.700598 kcal Electronic energy + Delta-G solvation = -15349.247401 eV Core-core repulsion = 12923.583564 eV Total energy + Delta-G solvation = -2425.663836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.18422 -38.65486 -35.36870 -34.95896 -32.67045 -31.17391 -28.86942 -27.58758 -26.35489 -24.55096 -23.60975 -21.79071 -18.94789 -18.15586 -17.63696 -17.05457 -16.63025 -16.13940 -15.27194 -15.10037 -14.95329 -14.16063 -13.78496 -13.57950 -13.49628 -13.09633 -13.02755 -12.77224 -12.68053 -12.48725 -12.21316 -12.15643 -12.11052 -11.79209 -11.15867 -10.55255 -10.14376 -9.81492 -9.29815 -8.12471 -6.25848 -0.12099 0.21090 1.45142 1.47234 1.54689 2.41438 2.74612 2.88110 3.17367 3.32524 3.50351 3.72812 4.18779 4.33984 4.47108 4.52728 4.64626 4.70775 4.82771 4.88472 4.94639 4.98588 5.10165 5.17291 5.38887 5.51273 5.64328 5.75522 6.09507 6.18872 6.37460 6.67044 6.85047 6.93653 7.43210 8.93978 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043858 B = 0.008338 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.267671 B = 3357.327471 C = 3499.948569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.088 3.912 3 N -0.452 5.452 4 C 0.043 3.957 5 C 0.045 3.955 6 N -0.501 5.501 7 C 0.244 3.756 8 N -0.484 5.484 9 C 0.053 3.947 10 C 0.231 3.769 11 H -0.027 1.027 12 C -0.113 4.113 13 C -0.520 4.520 14 H 0.069 0.931 15 C 0.011 3.989 16 N -0.923 5.923 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.270 1.270 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.211 0.789 25 H 0.194 0.806 26 H 0.012 0.988 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.000 1.000 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 10.024 6.408 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 N -0.167 5.167 4 C -0.117 4.117 5 C -0.117 4.117 6 N -0.219 5.219 7 C 0.013 3.987 8 N -0.208 5.208 9 C -0.094 4.094 10 C 0.125 3.875 11 H -0.009 1.009 12 C -0.172 4.172 13 C -0.558 4.558 14 H 0.087 0.913 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.213 1.213 20 H -0.195 1.195 21 H 0.109 0.891 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.228 0.772 25 H 0.211 0.789 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.470 10.005 6.205 11.783 hybrid contribution 0.858 -1.194 -0.298 1.500 sum 0.387 8.812 5.907 10.616 Atomic orbital electron populations 1.20566 0.86095 1.03750 1.03835 1.22330 0.99558 0.87341 0.96094 1.68335 1.10054 1.28272 1.10085 1.24284 0.90291 1.00932 0.96163 1.24197 1.03123 0.87986 0.96365 1.68598 1.10627 1.32514 1.10209 1.21081 0.87706 0.94137 0.95756 1.60405 1.51968 1.03049 1.05346 1.22124 0.99624 0.98685 0.89008 1.19017 0.92810 0.90019 0.85675 1.00937 1.21581 0.97953 0.96586 1.01059 1.21342 1.18296 1.02818 1.13382 0.91332 1.25771 0.96564 1.01512 0.94970 1.70032 1.33361 1.36186 1.16626 0.85483 0.79103 0.78688 0.77586 1.19263 1.21257 1.19481 0.89086 0.89911 0.90321 0.77219 0.78878 0.96975 0.91250 0.90171 0.91584 0.94399 0.98139 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.53 9.98 71.24 0.71 -1.82 16 2 C 0.09 3.11 6.81 42.79 0.29 3.40 16 3 N -0.45 -14.18 10.41 -182.77 -1.90 -16.08 16 4 C 0.04 1.10 11.21 84.62 0.95 2.05 16 5 C 0.04 1.31 11.22 84.63 0.95 2.26 16 6 N -0.50 -20.02 9.89 -192.64 -1.90 -21.92 16 7 C 0.24 9.89 3.71 133.02 0.49 10.38 16 8 N -0.48 -21.36 3.55 -706.39 -2.51 -23.87 16 9 C 0.05 2.10 9.12 127.69 1.16 3.26 16 10 C 0.23 12.13 1.83 44.17 0.08 12.21 16 11 H -0.03 -1.64 7.91 -2.38 -0.02 -1.66 16 12 C -0.11 -5.89 8.73 71.98 0.63 -5.27 16 13 C -0.52 -28.42 8.01 25.60 0.20 -28.21 16 14 H 0.07 3.61 6.72 -2.91 -0.02 3.59 16 15 C 0.01 0.58 5.30 84.65 0.45 1.03 16 16 N -0.92 -53.76 11.29 21.45 0.24 -53.51 16 17 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 23 H 0.08 2.64 7.42 -2.39 -0.02 2.63 16 24 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 25 H 0.19 4.07 8.06 -2.91 -0.02 4.04 16 26 H 0.01 0.50 8.12 -2.38 -0.02 0.48 16 27 H 0.07 2.34 8.06 -2.38 -0.02 2.33 16 28 H 0.08 3.19 6.70 -2.38 -0.02 3.17 16 29 H 0.07 3.75 6.00 -2.39 -0.01 3.74 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.00 -0.02 7.20 -2.39 -0.02 -0.04 16 32 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -66.08 268.89 2.97 -63.11 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.10 Total: 7.76 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.92 Total: -0.71 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -6.08 Total: -115.39 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -66.08 2.97 -63.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214341388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.808 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds