Wall clock time and date at job start Mon Mar 30 2020 02:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38813 * 120.98672 * 2 1 4 4 N 1.31786 * 120.01836 * 179.97438 * 3 2 1 5 5 N 1.28353 * 122.28535 * 359.97438 * 4 3 2 6 6 C 1.32485 * 122.06916 * 359.97438 * 5 4 3 7 7 N 1.39041 * 120.15758 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99880 * 10.74816 * 7 6 5 9 9 C 1.46507 * 120.00331 * 190.75048 * 7 6 5 10 10 H 1.08994 * 109.46822 * 1.90463 * 9 7 6 11 11 C 1.52995 * 109.47148 * 121.91112 * 9 7 6 12 12 C 1.50706 * 109.46902 * 241.91002 * 9 7 6 13 13 H 1.08002 * 119.99887 * 359.97438 * 12 9 7 14 14 C 1.37878 * 119.99864 * 179.97438 * 12 9 7 15 15 N 1.31507 * 119.99741 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99742 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.46992 * 89.99985 * 16 14 12 18 18 H 1.48504 * 109.46998 * 209.99999 * 16 14 12 19 19 H 1.48500 * 109.47543 * 329.99724 * 16 14 12 20 20 C 1.38560 * 120.97492 * 179.72242 * 2 1 3 21 21 H 1.08998 * 109.47185 * 89.99455 * 1 2 3 22 22 H 1.08996 * 109.47426 * 210.00027 * 1 2 3 23 23 H 1.09005 * 109.47018 * 329.99794 * 1 2 3 24 24 H 1.07998 * 119.98736 * 359.97438 * 3 2 1 25 25 H 1.08991 * 109.47079 * 90.00532 * 8 7 6 26 26 H 1.09006 * 109.47046 * 210.00009 * 8 7 6 27 27 H 1.08993 * 109.47057 * 329.99918 * 8 7 6 28 28 H 1.08995 * 109.47346 * 60.00240 * 11 9 7 29 29 H 1.09007 * 109.46960 * 180.02562 * 11 9 7 30 30 H 1.09002 * 109.47303 * 299.99987 * 11 9 7 31 31 H 0.97005 * 119.99896 * 179.97438 * 15 14 12 32 32 H 1.08006 * 121.05242 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2217 1.1900 0.0000 4 7 3.5393 1.1678 0.0005 5 7 4.2065 0.0712 0.0015 6 6 3.6130 -1.1132 0.0026 7 7 4.3749 -2.2763 0.0042 8 6 5.8189 -2.2057 0.2413 9 6 3.7338 -3.5724 -0.2313 10 1 2.6707 -3.4230 -0.4199 11 6 4.3773 -4.2468 -1.4445 12 6 3.9103 -4.4480 0.9825 13 1 4.4468 -4.0764 1.8431 14 6 3.3869 -5.7236 0.9944 15 7 3.5414 -6.4878 2.0534 16 14 2.4597 -6.3665 -0.4943 17 1 3.4107 -7.0329 -1.4199 18 1 1.4316 -7.3432 -0.0533 19 1 1.7995 -5.2347 -1.1932 20 6 2.2201 -1.1880 0.0058 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6976 2.1344 -0.0004 25 1 6.0163 -2.2922 1.3097 26 1 6.3141 -3.0207 -0.2868 27 1 6.2006 -1.2519 -0.1228 28 1 5.4403 -4.3963 -1.2558 29 1 3.8999 -5.2110 -1.6200 30 1 4.2496 -3.6135 -2.3225 31 1 3.1729 -7.3851 2.0620 32 1 1.7135 -2.1419 0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235062305.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:03 Heat of formation + Delta-G solvation = 69.827083 kcal Electronic energy + Delta-G solvation = -15098.296783 eV Core-core repulsion = 12673.982693 eV Total energy + Delta-G solvation = -2424.314090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44924 -37.07042 -34.06443 -33.11671 -31.29584 -29.75512 -28.07374 -25.76247 -25.15530 -23.95359 -21.74107 -19.84599 -17.34610 -16.85900 -16.39109 -15.82700 -15.11679 -14.56578 -13.84512 -13.54634 -13.24067 -12.89655 -12.76758 -12.67041 -12.34711 -12.26330 -11.90572 -11.39621 -11.31105 -10.78368 -10.54190 -10.29337 -10.14455 -9.75576 -9.34767 -9.32614 -9.02300 -8.78197 -7.05180 -6.27940 -4.30400 1.33743 1.73833 3.10265 3.17910 3.23550 3.55470 4.16812 4.18603 4.77894 5.00378 5.00756 5.12190 5.20366 5.33722 5.58486 5.72787 5.88142 5.92961 6.08059 6.13240 6.19898 6.26523 6.29905 6.45202 6.50362 6.59348 6.69090 6.91564 7.36227 7.75297 7.97862 8.35333 8.76857 9.30197 9.42278 10.84745 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.009430 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.195869 B = 2968.550349 C = 3421.458867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.054 4.054 3 C -0.039 4.039 4 N -0.208 5.208 5 N -0.330 5.330 6 C 0.358 3.642 7 N -0.569 5.569 8 C 0.103 3.897 9 C 0.239 3.761 10 H 0.048 0.952 11 C -0.165 4.165 12 C -0.532 4.532 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.889 5.889 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.292 1.292 19 H -0.267 1.267 20 C -0.183 4.183 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.158 0.842 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.267 0.733 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 8.496 -5.885 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.065 4.065 3 C -0.210 4.210 4 N -0.048 5.048 5 N -0.184 5.184 6 C 0.116 3.884 7 N -0.278 5.278 8 C -0.040 4.040 9 C 0.137 3.863 10 H 0.066 0.934 11 C -0.223 4.223 12 C -0.571 4.571 13 H 0.099 0.901 14 C -0.127 4.127 15 N -0.526 5.526 16 Si 0.713 3.287 17 H -0.202 1.202 18 H -0.219 1.219 19 H -0.192 1.192 20 C -0.217 4.217 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.175 0.825 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.039 8.918 -5.790 11.059 hybrid contribution -1.846 -1.465 -0.654 2.446 sum -4.885 7.453 -6.444 10.998 Atomic orbital electron populations 1.20763 0.89916 1.03422 1.02747 1.20851 0.97533 0.93127 0.94965 1.23633 0.92525 0.98235 1.06636 1.72579 1.07267 1.19200 1.05712 1.72882 1.30362 0.93615 1.21541 1.20126 0.89324 0.89055 0.89920 1.46676 1.07116 1.02950 1.71060 1.21478 0.79932 1.01736 1.00867 1.19383 0.92972 0.79414 0.94573 0.93443 1.22506 1.02268 0.99621 0.97873 1.21191 1.37513 0.97986 1.00374 0.90060 1.24895 0.95414 0.96403 0.95973 1.69868 1.44898 1.09191 1.28638 0.86935 0.79763 0.79139 0.82872 1.20182 1.21949 1.19211 1.21913 0.93402 0.99899 1.06469 0.90550 0.90811 0.90898 0.82506 0.93349 0.91381 0.91371 0.92011 0.92926 0.94630 0.92238 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.07 36.01 0.36 -0.84 16 2 C -0.05 -0.83 5.92 -104.29 -0.62 -1.44 16 3 C -0.04 -0.60 11.03 -17.36 -0.19 -0.79 16 4 N -0.21 -3.90 11.49 30.57 0.35 -3.55 16 5 N -0.33 -6.74 10.27 31.23 0.32 -6.42 16 6 C 0.36 7.30 7.41 -154.78 -1.15 6.16 16 7 N -0.57 -11.98 2.87 -175.26 -0.50 -12.48 16 8 C 0.10 1.95 9.89 59.85 0.59 2.54 16 9 C 0.24 5.35 2.13 -69.08 -0.15 5.20 16 10 H 0.05 1.06 4.53 -51.93 -0.24 0.83 16 11 C -0.16 -3.37 8.62 37.15 0.32 -3.05 16 12 C -0.53 -14.05 8.98 -34.44 -0.31 -14.36 16 13 H 0.08 2.39 7.95 -52.49 -0.42 1.98 16 14 C 0.08 2.07 5.45 -17.82 -0.10 1.98 16 15 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 16 Si 0.88 20.25 24.37 -169.99 -4.14 16.10 16 17 H -0.28 -6.15 6.87 56.52 0.39 -5.77 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -5.75 6.53 56.52 0.37 -5.38 16 20 C -0.18 -3.36 9.06 -39.00 -0.35 -3.71 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 23 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 24 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.21 6.33 -51.93 -0.33 0.89 16 27 H 0.07 1.21 7.27 -51.93 -0.38 0.83 16 28 H 0.06 1.22 6.60 -51.93 -0.34 0.88 16 29 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.15 2.70 6.03 -52.48 -0.32 2.38 16 LS Contribution 261.00 15.07 3.93 3.93 Total: -1.00 -29.83 261.00 -4.76 -34.58 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.90 Total: 1.17 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.59 Total: -8.32 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.94 Total: -47.48 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.14 Total: 16.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.83 -4.76 -34.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235062305.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.411 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds