Wall clock time and date at job start Mon Mar 30 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38813 * 120.98672 * 2 1 4 4 N 1.31786 * 120.01836 * 179.97438 * 3 2 1 5 5 N 1.28353 * 122.28535 * 359.97438 * 4 3 2 6 6 C 1.32485 * 122.06916 * 359.97438 * 5 4 3 7 7 N 1.39041 * 120.15758 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99880 * 10.74816 * 7 6 5 9 9 C 1.46507 * 120.00331 * 190.75048 * 7 6 5 10 10 H 1.08994 * 109.46822 * 1.90463 * 9 7 6 11 11 C 1.52995 * 109.47148 * 121.91112 * 9 7 6 12 12 C 1.50706 * 109.46902 * 241.91002 * 9 7 6 13 13 H 1.08002 * 119.99887 * 359.97438 * 12 9 7 14 14 C 1.37878 * 119.99864 * 179.97438 * 12 9 7 15 15 N 1.31507 * 119.99741 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99742 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.46992 * 89.99985 * 16 14 12 18 18 H 1.48504 * 109.46998 * 209.99999 * 16 14 12 19 19 H 1.48500 * 109.47543 * 329.99724 * 16 14 12 20 20 C 1.38560 * 120.97492 * 179.72242 * 2 1 3 21 21 H 1.08998 * 109.47185 * 89.99455 * 1 2 3 22 22 H 1.08996 * 109.47426 * 210.00027 * 1 2 3 23 23 H 1.09005 * 109.47018 * 329.99794 * 1 2 3 24 24 H 1.07998 * 119.98736 * 359.97438 * 3 2 1 25 25 H 1.08991 * 109.47079 * 90.00532 * 8 7 6 26 26 H 1.09006 * 109.47046 * 210.00009 * 8 7 6 27 27 H 1.08993 * 109.47057 * 329.99918 * 8 7 6 28 28 H 1.08995 * 109.47346 * 60.00240 * 11 9 7 29 29 H 1.09007 * 109.46960 * 180.02562 * 11 9 7 30 30 H 1.09002 * 109.47303 * 299.99987 * 11 9 7 31 31 H 0.97005 * 119.99896 * 179.97438 * 15 14 12 32 32 H 1.08006 * 121.05242 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2217 1.1900 0.0000 4 7 3.5393 1.1678 0.0005 5 7 4.2065 0.0712 0.0015 6 6 3.6130 -1.1132 0.0026 7 7 4.3749 -2.2763 0.0042 8 6 5.8189 -2.2057 0.2413 9 6 3.7338 -3.5724 -0.2313 10 1 2.6707 -3.4230 -0.4199 11 6 4.3773 -4.2468 -1.4445 12 6 3.9103 -4.4480 0.9825 13 1 4.4468 -4.0764 1.8431 14 6 3.3869 -5.7236 0.9944 15 7 3.5414 -6.4878 2.0534 16 14 2.4597 -6.3665 -0.4943 17 1 3.4107 -7.0329 -1.4199 18 1 1.4316 -7.3432 -0.0533 19 1 1.7995 -5.2347 -1.1932 20 6 2.2201 -1.1880 0.0058 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6976 2.1344 -0.0004 25 1 6.0163 -2.2922 1.3097 26 1 6.3141 -3.0207 -0.2868 27 1 6.2006 -1.2519 -0.1228 28 1 5.4403 -4.3963 -1.2558 29 1 3.8999 -5.2110 -1.6200 30 1 4.2496 -3.6135 -2.3225 31 1 3.1729 -7.3851 2.0620 32 1 1.7135 -2.1419 0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235062305.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:02 Heat of formation + Delta-G solvation = 50.331967 kcal Electronic energy + Delta-G solvation = -15099.142155 eV Core-core repulsion = 12673.982693 eV Total energy + Delta-G solvation = -2425.159462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.84006 -38.66491 -35.34315 -34.94717 -33.00298 -31.31686 -29.24895 -27.34410 -26.92465 -25.38141 -23.18627 -21.45973 -19.04926 -18.37934 -18.06518 -17.27244 -16.73883 -16.06364 -15.40066 -15.15016 -14.65209 -14.38590 -14.04667 -13.96750 -13.86258 -13.66705 -13.18719 -13.05904 -12.93085 -12.45741 -12.09424 -11.91316 -11.68273 -11.52111 -11.16526 -10.81506 -10.57640 -10.42238 -8.62254 -8.35303 -6.43084 -0.00100 0.38307 1.30745 1.34616 1.45433 2.03454 2.26471 2.78970 2.98360 3.51803 3.76384 3.87128 3.90843 4.12716 4.31916 4.42115 4.53550 4.61523 4.71602 4.71918 4.82709 4.88104 4.92215 4.95889 5.09864 5.25367 5.29446 5.45207 5.48727 6.00291 6.31981 6.54436 6.62295 7.22718 8.01896 8.81297 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.009430 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.195869 B = 2968.550349 C = 3421.458867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.038 4.038 3 C -0.025 4.025 4 N -0.236 5.236 5 N -0.355 5.355 6 C 0.338 3.662 7 N -0.585 5.585 8 C 0.108 3.892 9 C 0.245 3.755 10 H 0.054 0.946 11 C -0.160 4.160 12 C -0.532 4.532 13 H 0.032 0.968 14 C 0.021 3.979 15 N -0.942 5.942 16 Si 0.946 3.054 17 H -0.262 1.262 18 H -0.295 1.295 19 H -0.240 1.240 20 C -0.207 4.207 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.203 0.797 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 9.885 -7.975 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.048 4.048 3 C -0.197 4.197 4 N -0.075 5.075 5 N -0.208 5.208 6 C 0.097 3.903 7 N -0.296 5.296 8 C -0.034 4.034 9 C 0.142 3.858 10 H 0.071 0.929 11 C -0.218 4.218 12 C -0.571 4.571 13 H 0.050 0.950 14 C -0.178 4.178 15 N -0.581 5.581 16 Si 0.772 3.228 17 H -0.188 1.188 18 H -0.223 1.223 19 H -0.164 1.164 20 C -0.240 4.240 21 H 0.117 0.883 22 H 0.092 0.908 23 H 0.120 0.880 24 H 0.219 0.781 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.223 10.366 -7.891 14.035 hybrid contribution -1.229 -1.711 0.100 2.109 sum -6.452 8.655 -7.790 13.313 Atomic orbital electron populations 1.20917 0.86226 1.04926 1.04567 1.21379 0.99948 0.91699 0.91802 1.24383 0.91548 1.00246 1.03524 1.72514 1.09168 1.18661 1.07107 1.72815 1.31438 0.93932 1.22655 1.20339 0.90240 0.88904 0.90860 1.46585 1.07534 1.02852 1.72610 1.21432 0.79700 1.02549 0.99761 1.19182 0.93714 0.79551 0.93396 0.92866 1.22408 1.02074 0.99625 0.97722 1.21360 1.36359 0.98775 1.00608 0.94976 1.25769 0.96386 0.96525 0.99087 1.70030 1.46857 1.09818 1.31370 0.85900 0.78550 0.79141 0.79200 1.18780 1.22270 1.16381 1.22073 0.92838 1.01175 1.07925 0.88269 0.90762 0.88007 0.78057 0.95306 0.90625 0.90342 0.91958 0.93113 0.92133 0.92172 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.07 71.24 0.72 -1.13 16 2 C -0.04 -1.02 5.92 -19.65 -0.12 -1.14 16 3 C -0.03 -0.69 11.03 84.84 0.94 0.25 16 4 N -0.24 -8.50 11.49 -57.21 -0.66 -9.15 16 5 N -0.36 -14.42 10.27 -55.10 -0.57 -14.98 16 6 C 0.34 13.71 7.41 133.11 0.99 14.70 16 7 N -0.59 -24.86 2.87 -708.39 -2.03 -26.90 16 8 C 0.11 4.24 9.89 127.77 1.26 5.51 16 9 C 0.24 10.86 2.13 44.24 0.09 10.96 16 10 H 0.05 2.31 4.53 -2.39 -0.01 2.30 16 11 C -0.16 -6.27 8.62 71.98 0.62 -5.65 16 12 C -0.53 -28.96 8.98 25.60 0.23 -28.73 16 13 H 0.03 2.01 7.95 -2.91 -0.02 1.98 16 14 C 0.02 1.16 5.45 84.66 0.46 1.62 16 15 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 16 Si 0.95 41.03 24.37 68.60 1.67 42.70 16 17 H -0.26 -10.78 6.87 99.48 0.68 -10.09 16 18 H -0.30 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.24 -9.31 6.53 99.48 0.65 -8.66 16 20 C -0.21 -7.30 9.06 22.65 0.21 -7.09 16 21 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 23 H 0.10 1.19 8.11 -2.38 -0.02 1.17 16 24 H 0.20 3.60 8.06 -2.91 -0.02 3.57 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.76 6.33 -2.38 -0.02 2.74 16 27 H 0.08 2.85 7.27 -2.39 -0.02 2.83 16 28 H 0.06 2.39 6.60 -2.39 -0.02 2.37 16 29 H 0.05 1.99 3.27 -2.38 -0.01 1.98 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 32 H 0.14 5.11 6.03 -2.91 -0.02 5.09 16 Total: -1.00 -67.12 261.00 5.15 -61.96 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.04 Total: 13.22 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.40 Total: -10.70 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -2.96 Total: -107.19 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.67 Total: 42.70 kcal Total: -67.12 5.15 -61.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235062305.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.296 kcal (2) G-P(sol) polarization free energy of solvation -67.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds