Wall clock time and date at job start Mon Mar 30 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47200 * 2 1 4 4 C 1.52998 * 109.46972 * 120.00326 * 2 1 3 5 5 C 1.50705 * 109.47003 * 174.99807 * 4 2 1 6 6 C 1.38817 * 119.98501 * 124.97661 * 5 4 2 7 7 C 1.38566 * 118.04688 * 180.02562 * 6 5 4 8 8 C 1.39580 * 117.90315 * 0.02562 * 7 6 5 9 9 N 1.38873 * 120.16406 * 180.02562 * 8 7 6 10 10 C 1.36907 * 120.00121 * 359.97438 * 9 8 7 11 11 H 1.08000 * 119.99784 * 0.02562 * 10 9 8 12 12 C 1.38823 * 120.00025 * 180.02562 * 10 9 8 13 13 N 1.31558 * 119.99949 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99843 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47149 * 60.00149 * 14 12 10 16 16 H 1.48495 * 109.47281 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47125 * 300.00161 * 14 12 10 18 18 N 1.32576 * 119.67131 * 359.97438 * 8 7 6 19 19 N 1.28354 * 122.05810 * 359.97438 * 18 8 7 20 20 H 1.09001 * 109.46592 * 299.99611 * 1 2 3 21 21 H 1.08990 * 109.46994 * 59.99542 * 1 2 3 22 22 H 1.09001 * 109.46844 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46559 * 239.99832 * 2 1 3 24 24 H 1.09003 * 109.47496 * 299.99850 * 3 2 1 25 25 H 1.09001 * 109.47501 * 60.00409 * 3 2 1 26 26 H 1.09001 * 109.47080 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47495 * 54.99970 * 4 2 1 28 28 H 1.08994 * 109.47374 * 294.99275 * 4 2 1 29 29 H 1.07998 * 120.98078 * 0.02562 * 6 5 4 30 30 H 1.08000 * 121.05115 * 179.97438 * 7 6 5 31 31 H 0.97001 * 120.00039 * 179.97438 * 9 8 7 32 32 H 0.97007 * 119.99888 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1888 6 6 4.3152 -0.3422 2.2337 7 6 5.6922 -0.4621 2.1361 8 6 6.2159 -1.0656 0.9916 9 7 7.5893 -1.2104 0.8454 10 6 8.4333 -0.7602 1.8250 11 1 8.0309 -0.2929 2.7116 12 6 9.8062 -0.9045 1.6785 13 7 10.2963 -1.4743 0.5987 14 14 10.9576 -0.2910 3.0154 15 1 10.6568 -0.9936 4.2886 16 1 12.3633 -0.5613 2.6204 17 1 10.7681 1.1703 3.1997 18 7 5.3957 -1.5007 0.0454 19 7 4.1210 -1.3869 0.1435 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6054 -1.7199 1.2951 28 1 1.7518 -0.1584 2.1369 29 1 3.8571 0.1168 3.0972 30 1 6.3399 -0.0993 2.9205 31 1 7.9507 -1.6304 0.0493 32 1 11.2557 -1.5747 0.4962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259212905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:53 Heat of formation + Delta-G solvation = 34.490088 kcal Electronic energy + Delta-G solvation = -14477.850378 eV Core-core repulsion = 12052.003961 eV Total energy + Delta-G solvation = -2425.846418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78135 -36.51299 -35.34763 -32.32836 -31.98377 -29.73987 -26.92620 -26.70160 -24.57244 -23.35801 -21.54408 -19.76385 -17.95023 -16.91431 -16.07233 -15.13950 -14.64888 -14.58782 -14.15976 -13.69414 -13.39411 -13.05806 -12.61164 -12.19889 -12.06999 -11.78347 -11.61311 -11.48083 -10.97419 -10.82844 -10.66827 -10.45266 -10.44042 -10.34120 -9.85393 -9.14862 -9.02076 -8.39224 -7.29817 -6.75485 -3.98199 2.00844 2.26766 3.05939 3.06701 3.08153 3.86584 4.53161 4.73173 5.03882 5.12735 5.17700 5.26101 5.52267 5.62321 5.70603 5.79455 5.95895 5.97303 6.03817 6.09026 6.14048 6.21301 6.29614 6.47803 6.57049 6.69940 6.78497 7.05413 7.16154 7.30749 7.60578 8.53536 9.06018 9.26088 10.13995 10.40310 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063335 B = 0.005641 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.985006 B = 4962.876392 C = 5133.733476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.034 4.034 5 C -0.063 4.063 6 C -0.078 4.078 7 C -0.197 4.197 8 C 0.292 3.708 9 N -0.517 5.517 10 C -0.309 4.309 11 H 0.104 0.896 12 C 0.028 3.972 13 N -0.877 5.877 14 Si 0.938 3.062 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.270 1.270 18 N -0.350 5.350 19 N -0.192 5.192 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.408 0.592 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 3.876 3.303 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.073 4.073 5 C -0.215 4.215 6 C -0.106 4.106 7 C -0.232 4.232 8 C 0.045 3.955 9 N -0.124 5.124 10 C -0.440 4.440 11 H 0.122 0.878 12 C -0.178 4.178 13 N -0.512 5.512 14 Si 0.763 3.237 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.195 1.195 18 N -0.210 5.210 19 N -0.038 5.038 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.244 0.756 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.336 3.159 1.930 10.979 hybrid contribution 1.107 0.846 1.788 2.267 sum -9.229 4.005 3.718 10.725 Atomic orbital electron populations 1.21850 0.95916 1.01346 1.01161 1.21084 0.94419 0.96306 0.99244 1.21777 1.01510 0.95965 1.00602 1.20126 0.89619 1.00047 0.97497 1.21709 0.96717 1.07943 0.95165 1.21691 0.93476 0.97222 0.98191 1.21530 0.95156 1.06565 0.99916 1.19916 0.87304 0.95872 0.92439 1.40703 0.99768 1.51374 1.20569 1.19707 0.87371 1.36884 1.00037 0.87821 1.25390 0.97595 0.96739 0.98102 1.69688 1.14961 1.40166 1.26407 0.85799 0.78651 0.79350 0.79864 1.19487 1.20429 1.19494 1.72811 0.97137 1.25447 1.25585 1.72266 1.03294 1.08252 1.19948 0.93113 0.93096 0.92863 0.90203 0.93449 0.93294 0.92645 0.91670 0.91787 0.85966 0.84934 0.75633 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.25 2.85 -90.62 -0.26 -1.51 16 3 C -0.14 -1.92 9.01 37.15 0.33 -1.58 16 4 C -0.03 -0.49 5.10 -27.88 -0.14 -0.63 16 5 C -0.06 -1.19 5.24 -82.36 -0.43 -1.62 16 6 C -0.08 -1.44 9.81 -39.25 -0.39 -1.82 16 7 C -0.20 -4.16 9.42 -38.96 -0.37 -4.53 16 8 C 0.29 7.04 7.71 -154.83 -1.19 5.85 16 9 N -0.52 -13.14 5.44 -11.04 -0.06 -13.20 16 10 C -0.31 -7.75 9.56 -15.07 -0.14 -7.90 16 11 H 0.10 2.43 5.71 -52.49 -0.30 2.13 16 12 C 0.03 0.69 5.50 -17.45 -0.10 0.60 16 13 N -0.88 -22.95 13.05 55.49 0.72 -22.23 16 14 Si 0.94 18.96 29.55 -169.99 -5.02 13.94 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 18 N -0.35 -8.54 11.54 31.23 0.36 -8.18 16 19 N -0.19 -4.24 10.95 33.62 0.37 -3.88 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 1.25 7.82 -51.93 -0.41 0.84 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.90 7.38 -51.93 -0.38 0.51 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 29 H 0.12 1.79 8.00 -52.49 -0.42 1.37 16 30 H 0.13 2.65 6.05 -52.49 -0.32 2.33 16 31 H 0.41 10.76 8.02 -40.82 -0.33 10.43 16 32 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 273.30 15.07 4.12 4.12 Total: -1.00 -27.20 273.30 -6.09 -33.29 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.24 Total: 10.51 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.34 Total: -14.38 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 1.39 Total: -47.48 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.20 -6.09 -33.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259212905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.776 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds