Wall clock time and date at job start Mon Mar 30 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47200 * 2 1 4 4 C 1.52998 * 109.46972 * 120.00326 * 2 1 3 5 5 C 1.50705 * 109.47003 * 174.99807 * 4 2 1 6 6 C 1.38817 * 119.98501 * 124.97661 * 5 4 2 7 7 C 1.38566 * 118.04688 * 180.02562 * 6 5 4 8 8 C 1.39580 * 117.90315 * 0.02562 * 7 6 5 9 9 N 1.38873 * 120.16406 * 180.02562 * 8 7 6 10 10 C 1.36907 * 120.00121 * 359.97438 * 9 8 7 11 11 H 1.08000 * 119.99784 * 0.02562 * 10 9 8 12 12 C 1.38823 * 120.00025 * 180.02562 * 10 9 8 13 13 N 1.31558 * 119.99949 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99843 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47149 * 60.00149 * 14 12 10 16 16 H 1.48495 * 109.47281 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47125 * 300.00161 * 14 12 10 18 18 N 1.32576 * 119.67131 * 359.97438 * 8 7 6 19 19 N 1.28354 * 122.05810 * 359.97438 * 18 8 7 20 20 H 1.09001 * 109.46592 * 299.99611 * 1 2 3 21 21 H 1.08990 * 109.46994 * 59.99542 * 1 2 3 22 22 H 1.09001 * 109.46844 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46559 * 239.99832 * 2 1 3 24 24 H 1.09003 * 109.47496 * 299.99850 * 3 2 1 25 25 H 1.09001 * 109.47501 * 60.00409 * 3 2 1 26 26 H 1.09001 * 109.47080 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47495 * 54.99970 * 4 2 1 28 28 H 1.08994 * 109.47374 * 294.99275 * 4 2 1 29 29 H 1.07998 * 120.98078 * 0.02562 * 6 5 4 30 30 H 1.08000 * 121.05115 * 179.97438 * 7 6 5 31 31 H 0.97001 * 120.00039 * 179.97438 * 9 8 7 32 32 H 0.97007 * 119.99888 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1888 6 6 4.3152 -0.3422 2.2337 7 6 5.6922 -0.4621 2.1361 8 6 6.2159 -1.0656 0.9916 9 7 7.5893 -1.2104 0.8454 10 6 8.4333 -0.7602 1.8250 11 1 8.0309 -0.2929 2.7116 12 6 9.8062 -0.9045 1.6785 13 7 10.2963 -1.4743 0.5987 14 14 10.9576 -0.2910 3.0154 15 1 10.6568 -0.9936 4.2886 16 1 12.3633 -0.5613 2.6204 17 1 10.7681 1.1703 3.1997 18 7 5.3957 -1.5007 0.0454 19 7 4.1210 -1.3869 0.1435 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6054 -1.7199 1.2951 28 1 1.7518 -0.1584 2.1369 29 1 3.8571 0.1168 3.0972 30 1 6.3399 -0.0993 2.9205 31 1 7.9507 -1.6304 0.0493 32 1 11.2557 -1.5747 0.4962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259212905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:52 Heat of formation + Delta-G solvation = 18.502876 kcal Electronic energy + Delta-G solvation = -14478.543636 eV Core-core repulsion = 12052.003961 eV Total energy + Delta-G solvation = -2426.539675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.48077 -37.98916 -36.82590 -34.10045 -33.58409 -31.36482 -28.22594 -27.89769 -26.27952 -24.99490 -23.16973 -20.95177 -19.69996 -18.64266 -17.76880 -16.54526 -16.28011 -16.00912 -15.57287 -15.34690 -14.69399 -14.58542 -13.98305 -13.51247 -13.48066 -13.23388 -12.95540 -12.67623 -12.43997 -12.34460 -12.18894 -12.00418 -11.70564 -11.45424 -11.31847 -10.86632 -10.68036 -10.07895 -9.10720 -8.56034 -5.88725 0.33723 0.61788 1.42031 1.50620 1.54326 2.20518 2.80377 2.97343 3.28265 3.78237 3.95749 4.12374 4.21701 4.24750 4.37462 4.40609 4.66004 4.86768 4.88522 4.89633 5.04678 5.09249 5.15069 5.17651 5.25941 5.37023 5.44021 5.56133 5.64661 5.70232 5.87947 6.67834 7.26285 7.39068 8.40611 8.62424 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063335 B = 0.005641 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.985006 B = 4962.876392 C = 5133.733476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.036 4.036 5 C -0.041 4.041 6 C -0.066 4.066 7 C -0.206 4.206 8 C 0.282 3.718 9 N -0.547 5.547 10 C -0.328 4.328 11 H 0.116 0.884 12 C -0.023 4.023 13 N -0.923 5.923 14 Si 1.009 2.991 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.261 1.261 18 N -0.388 5.388 19 N -0.224 5.224 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.020 0.980 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.394 0.606 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 5.239 5.631 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.075 4.075 5 C -0.195 4.195 6 C -0.093 4.093 7 C -0.240 4.240 8 C 0.035 3.965 9 N -0.156 5.156 10 C -0.458 4.458 11 H 0.134 0.866 12 C -0.224 4.224 13 N -0.561 5.561 14 Si 0.831 3.169 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.186 1.186 18 N -0.246 5.246 19 N -0.066 5.066 20 H 0.088 0.912 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.039 0.961 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.192 0.808 30 H 0.163 0.837 31 H 0.227 0.773 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.986 4.520 4.245 14.391 hybrid contribution 1.521 0.450 1.048 1.901 sum -11.465 4.970 5.293 13.571 Atomic orbital electron populations 1.21779 0.93128 1.02186 1.02463 1.21047 0.96693 0.95756 0.97534 1.21764 0.99187 0.96389 1.02272 1.20363 0.86093 1.01525 0.99491 1.22618 0.99256 1.04040 0.93618 1.22273 0.92199 0.95525 0.99317 1.21831 0.96848 1.06169 0.99188 1.20319 0.87128 0.95662 0.93382 1.40737 1.00328 1.53794 1.20744 1.20091 0.87898 1.37345 1.00432 0.86629 1.26371 0.98899 0.96880 1.00253 1.69817 1.15038 1.42605 1.28659 0.84742 0.76089 0.79046 0.77070 1.18541 1.20654 1.18575 1.72762 0.98279 1.26866 1.26718 1.72246 1.02459 1.10061 1.21827 0.91226 0.92436 0.92314 0.93095 0.92570 0.90993 0.96063 0.90617 0.88221 0.80800 0.83741 0.77283 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.19 71.98 0.66 -1.77 16 2 C -0.09 -2.22 2.85 -10.79 -0.03 -2.26 16 3 C -0.14 -3.38 9.01 71.98 0.65 -2.74 16 4 C -0.04 -0.90 5.10 29.85 0.15 -0.75 16 5 C -0.04 -1.46 5.24 42.70 0.22 -1.23 16 6 C -0.07 -2.18 9.81 22.49 0.22 -1.96 16 7 C -0.21 -8.44 9.42 22.67 0.21 -8.23 16 8 C 0.28 13.86 7.71 133.16 1.03 14.89 16 9 N -0.55 -29.02 5.44 -188.84 -1.03 -30.05 16 10 C -0.33 -16.84 9.56 84.04 0.80 -16.03 16 11 H 0.12 5.41 5.71 -2.91 -0.02 5.39 16 12 C -0.02 -1.18 5.50 84.87 0.47 -0.71 16 13 N -0.92 -50.51 13.05 21.65 0.28 -50.23 16 14 Si 1.01 39.20 29.55 68.60 2.03 41.22 16 15 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 16 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 18 N -0.39 -19.49 11.54 -55.10 -0.64 -20.13 16 19 N -0.22 -9.87 10.95 -47.53 -0.52 -10.39 16 20 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 1.54 7.82 -2.39 -0.02 1.52 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.02 0.64 7.38 -2.39 -0.02 0.62 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.10 1.86 7.92 -2.39 -0.02 1.85 16 29 H 0.17 4.02 8.00 -2.91 -0.02 3.99 16 30 H 0.14 5.52 6.05 -2.91 -0.02 5.50 16 31 H 0.39 22.23 8.02 -92.71 -0.74 21.49 16 32 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -62.07 273.30 4.89 -57.18 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.38 Total: 33.18 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 4.39 Total: -20.79 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -1.90 Total: -110.80 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.22 kcal Total: -62.07 4.89 -57.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259212905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.686 kcal (2) G-P(sol) polarization free energy of solvation -62.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds