Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46880 * 2 1 4 4 C 1.38816 * 119.99348 * 125.00049 * 3 2 1 5 5 C 1.38565 * 118.04001 * 179.97438 * 4 3 2 6 6 C 1.39481 * 117.90510 * 359.97438 * 5 4 3 7 7 N 1.39048 * 120.15808 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99823 * 4.99891 * 7 6 5 9 9 C 1.46503 * 119.99823 * 184.99668 * 7 6 5 10 10 C 1.50700 * 109.46505 * 90.00033 * 9 7 6 11 11 H 1.07994 * 120.00652 * 359.97438 * 10 9 7 12 12 C 1.37881 * 119.99470 * 180.02562 * 10 9 7 13 13 N 1.31507 * 120.00294 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99871 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46843 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46900 * 119.99600 * 14 12 10 17 17 H 1.48499 * 109.46620 * 239.99641 * 14 12 10 18 18 N 1.32489 * 119.68485 * 0.02562 * 6 5 4 19 19 N 1.28356 * 122.07008 * 359.97438 * 18 6 5 20 20 H 1.09000 * 109.47325 * 60.00010 * 1 2 3 21 21 H 1.09005 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47247 * 300.00121 * 1 2 3 23 23 H 1.09001 * 109.46970 * 239.99851 * 2 1 3 24 24 H 1.09001 * 109.46876 * 119.99702 * 2 1 3 25 25 H 1.08000 * 120.98426 * 359.97438 * 4 3 2 26 26 H 1.08007 * 121.04725 * 179.72557 * 5 4 3 27 27 H 1.09000 * 109.47388 * 90.00307 * 8 7 6 28 28 H 1.09008 * 109.47138 * 210.00285 * 8 7 6 29 29 H 1.09001 * 109.47388 * 329.99781 * 8 7 6 30 30 H 1.08993 * 109.47176 * 209.99603 * 9 7 6 31 31 H 1.09001 * 109.46946 * 330.00222 * 9 7 6 32 32 H 0.97004 * 120.00324 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9137 1.8452 0.9848 5 6 3.3501 3.1597 0.9458 6 6 2.8762 3.9747 -0.0821 7 7 3.2832 5.3016 -0.1657 8 6 4.2948 5.8171 0.7601 9 6 2.7005 6.1841 -1.1796 10 6 1.4766 6.8582 -0.6151 11 1 1.1638 6.6499 0.3973 12 6 0.7555 7.7402 -1.3917 13 7 1.1360 7.9936 -2.6248 14 14 -0.7613 8.5765 -0.6919 15 1 -0.9743 8.1252 0.7068 16 1 -0.5691 10.0488 -0.7136 17 1 -1.9462 8.2197 -1.5126 18 7 2.0354 3.4787 -0.9780 19 7 1.6353 2.2599 -0.9356 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.2495 1.1708 1.7587 26 1 4.0326 3.5424 1.6903 27 1 5.2864 5.6763 0.3300 28 1 4.1213 6.8793 0.9331 29 1 4.2293 5.2795 1.7060 30 1 3.4315 6.9397 -1.4670 31 1 2.4212 5.5973 -2.0547 32 1 0.6289 8.6144 -3.1711 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259216137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = 57.583559 kcal Electronic energy + Delta-G solvation = -14699.877194 eV Core-core repulsion = 12275.032184 eV Total energy + Delta-G solvation = -2424.845010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34786 -36.57121 -33.99404 -32.85610 -31.92966 -29.53301 -28.01989 -25.66490 -24.21672 -23.60970 -21.56410 -20.83765 -16.89031 -16.75446 -16.32687 -15.33025 -14.68511 -14.55745 -13.94333 -13.85403 -13.51992 -13.33774 -12.82529 -12.17835 -12.03082 -11.76494 -11.41317 -11.19114 -11.02873 -10.87375 -10.58972 -10.35133 -10.13518 -9.98634 -9.66715 -9.23602 -8.77298 -8.42374 -6.95397 -6.01667 -4.08593 1.45037 1.83357 3.29910 3.37704 3.41198 3.70862 4.29548 4.44890 4.75889 4.96879 5.10666 5.24978 5.30909 5.40368 5.44448 5.57377 5.66465 5.79821 5.87608 5.96970 6.11201 6.18509 6.20968 6.41099 6.58654 6.65268 7.07375 7.45404 7.82098 8.02837 8.16455 8.23935 8.94883 9.55565 9.65148 11.04149 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.007901 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.678536 B = 3542.850275 C = 4115.977216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C -0.021 4.021 4 C -0.081 4.081 5 C -0.200 4.200 6 C 0.351 3.649 7 N -0.583 5.583 8 C 0.096 3.904 9 C 0.249 3.751 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.282 1.282 18 N -0.284 5.284 19 N -0.197 5.197 20 H 0.067 0.933 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 -11.329 8.079 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C -0.171 4.171 4 C -0.109 4.109 5 C -0.235 4.235 6 C 0.109 3.891 7 N -0.292 5.292 8 C -0.049 4.049 9 C 0.130 3.870 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.208 1.208 18 N -0.137 5.137 19 N -0.041 5.041 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.153 0.847 26 H 0.156 0.844 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.942 -10.663 6.548 13.119 hybrid contribution 0.059 0.410 1.755 1.803 sum 4.001 -10.254 8.303 13.787 Atomic orbital electron populations 1.21708 0.94693 1.01066 1.02871 1.20154 0.96511 0.90244 1.02165 1.22352 1.00215 0.98441 0.96055 1.21870 0.95541 0.95404 0.98096 1.21805 1.06029 0.94872 1.00745 1.20134 0.90879 0.87401 0.90687 1.47011 1.40616 1.05757 1.35850 1.21631 0.90366 1.00549 0.92310 1.19410 0.92951 0.88133 0.86503 1.21465 1.10675 1.24791 0.99593 0.92618 1.24911 0.97627 0.96633 0.94746 1.69935 1.39920 1.35614 1.07717 0.86469 0.83018 0.78955 0.79141 1.19933 1.20956 1.20787 1.73241 1.12931 1.05094 1.22385 1.72692 1.15756 0.96949 1.18666 0.91433 0.92837 0.93076 0.90767 0.91182 0.84686 0.84391 0.93730 0.90387 0.92498 0.95068 0.92972 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.78 37.16 0.36 -1.43 16 2 C -0.05 -0.64 6.35 -27.89 -0.18 -0.81 16 3 C -0.02 -0.35 6.26 -82.40 -0.52 -0.87 16 4 C -0.08 -1.19 9.81 -39.25 -0.39 -1.57 16 5 C -0.20 -3.32 9.35 -39.00 -0.36 -3.69 16 6 C 0.35 7.47 7.45 -154.77 -1.15 6.32 16 7 N -0.58 -12.68 2.97 -182.95 -0.54 -13.23 16 8 C 0.10 1.56 10.30 59.84 0.62 2.18 16 9 C 0.25 6.54 5.23 -5.19 -0.03 6.52 16 10 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 14 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 N -0.28 -6.74 10.27 31.23 0.32 -6.42 16 19 N -0.20 -4.14 11.05 33.61 0.37 -3.77 16 20 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 25 H 0.14 1.41 8.00 -52.49 -0.42 1.00 16 26 H 0.14 1.84 6.14 -52.48 -0.32 1.52 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.29 8.07 -51.92 -0.42 0.87 16 29 H 0.06 0.77 6.03 -51.93 -0.31 0.46 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.05 1.52 7.32 -51.93 -0.38 1.14 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -32.48 276.01 -6.37 -38.86 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.33 Total: -3.80 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -2.06 Total: -6.95 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.88 Total: -49.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.48 -6.37 -38.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259216137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.440 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds