Wall clock time and date at job start Mon Mar 30 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46880 * 2 1 4 4 C 1.38816 * 119.99348 * 125.00049 * 3 2 1 5 5 C 1.38565 * 118.04001 * 179.97438 * 4 3 2 6 6 C 1.39481 * 117.90510 * 359.97438 * 5 4 3 7 7 N 1.39048 * 120.15808 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99823 * 4.99891 * 7 6 5 9 9 C 1.46503 * 119.99823 * 184.99668 * 7 6 5 10 10 C 1.50700 * 109.46505 * 90.00033 * 9 7 6 11 11 H 1.07994 * 120.00652 * 359.97438 * 10 9 7 12 12 C 1.37881 * 119.99470 * 180.02562 * 10 9 7 13 13 N 1.31507 * 120.00294 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99871 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46843 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46900 * 119.99600 * 14 12 10 17 17 H 1.48499 * 109.46620 * 239.99641 * 14 12 10 18 18 N 1.32489 * 119.68485 * 0.02562 * 6 5 4 19 19 N 1.28356 * 122.07008 * 359.97438 * 18 6 5 20 20 H 1.09000 * 109.47325 * 60.00010 * 1 2 3 21 21 H 1.09005 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47247 * 300.00121 * 1 2 3 23 23 H 1.09001 * 109.46970 * 239.99851 * 2 1 3 24 24 H 1.09001 * 109.46876 * 119.99702 * 2 1 3 25 25 H 1.08000 * 120.98426 * 359.97438 * 4 3 2 26 26 H 1.08007 * 121.04725 * 179.72557 * 5 4 3 27 27 H 1.09000 * 109.47388 * 90.00307 * 8 7 6 28 28 H 1.09008 * 109.47138 * 210.00285 * 8 7 6 29 29 H 1.09001 * 109.47388 * 329.99781 * 8 7 6 30 30 H 1.08993 * 109.47176 * 209.99603 * 9 7 6 31 31 H 1.09001 * 109.46946 * 330.00222 * 9 7 6 32 32 H 0.97004 * 120.00324 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9137 1.8452 0.9848 5 6 3.3501 3.1597 0.9458 6 6 2.8762 3.9747 -0.0821 7 7 3.2832 5.3016 -0.1657 8 6 4.2948 5.8171 0.7601 9 6 2.7005 6.1841 -1.1796 10 6 1.4766 6.8582 -0.6151 11 1 1.1638 6.6499 0.3973 12 6 0.7555 7.7402 -1.3917 13 7 1.1360 7.9936 -2.6248 14 14 -0.7613 8.5765 -0.6919 15 1 -0.9743 8.1252 0.7068 16 1 -0.5691 10.0488 -0.7136 17 1 -1.9462 8.2197 -1.5126 18 7 2.0354 3.4787 -0.9780 19 7 1.6353 2.2599 -0.9356 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.2495 1.1708 1.7587 26 1 4.0326 3.5424 1.6903 27 1 5.2864 5.6763 0.3300 28 1 4.1213 6.8793 0.9331 29 1 4.2293 5.2795 1.7060 30 1 3.4315 6.9397 -1.4670 31 1 2.4212 5.5973 -2.0547 32 1 0.6289 8.6144 -3.1711 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259216137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:48 Heat of formation + Delta-G solvation = 36.408036 kcal Electronic energy + Delta-G solvation = -14700.795433 eV Core-core repulsion = 12275.032184 eV Total energy + Delta-G solvation = -2425.763249 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.76116 -38.11671 -35.29366 -34.82283 -33.36931 -30.87812 -29.85508 -27.19079 -25.63214 -25.25949 -22.99004 -22.24711 -18.74071 -18.22498 -18.12513 -16.62519 -16.49761 -16.11396 -15.28101 -15.13609 -14.85953 -14.72751 -14.30385 -13.86470 -13.31377 -13.22758 -13.03931 -12.79658 -12.61443 -12.46929 -12.15097 -12.07134 -11.78615 -11.54936 -11.15873 -10.83901 -10.64714 -10.15557 -8.63616 -8.12806 -6.36018 0.14233 0.47353 1.33583 1.36384 1.47468 2.18973 2.39448 2.88942 3.07631 3.50527 3.81784 3.89390 3.98405 4.27928 4.41073 4.43354 4.53938 4.65798 4.76241 4.85535 4.89881 5.04098 5.09003 5.12085 5.24695 5.35985 5.45849 5.57391 5.66642 6.05931 6.28612 6.55920 6.76470 7.33201 8.22139 8.85237 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.007901 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.678536 B = 3542.850275 C = 4115.977216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.014 4.014 4 C -0.067 4.067 5 C -0.189 4.189 6 C 0.323 3.677 7 N -0.602 5.602 8 C 0.094 3.906 9 C 0.269 3.731 10 C -0.537 4.537 11 H 0.047 0.953 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.964 3.036 15 H -0.270 1.270 16 H -0.268 1.268 17 H -0.282 1.282 18 N -0.353 5.353 19 N -0.246 5.246 20 H 0.035 0.965 21 H 0.083 0.917 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.194 0.806 26 H 0.177 0.823 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.017 0.983 31 H 0.010 0.990 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -13.163 10.996 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.166 4.166 4 C -0.095 4.095 5 C -0.223 4.223 6 C 0.081 3.919 7 N -0.313 5.313 8 C -0.049 4.049 9 C 0.147 3.853 10 C -0.575 4.575 11 H 0.065 0.935 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.789 3.211 15 H -0.195 1.195 16 H -0.193 1.193 17 H -0.207 1.207 18 N -0.204 5.204 19 N -0.086 5.086 20 H 0.054 0.946 21 H 0.102 0.898 22 H 0.064 0.936 23 H 0.100 0.900 24 H 0.132 0.868 25 H 0.211 0.789 26 H 0.194 0.806 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.452 -12.524 9.465 16.317 hybrid contribution -0.065 0.773 0.895 1.184 sum 4.387 -11.751 10.361 16.269 Atomic orbital electron populations 1.21689 0.94997 1.02477 1.01060 1.20373 0.96196 0.87771 1.04631 1.23239 0.98977 0.99589 0.94809 1.22519 0.93528 0.95316 0.98173 1.22229 1.05490 0.94991 0.99551 1.20492 0.91634 0.87641 0.92128 1.46854 1.42229 1.05881 1.36359 1.21845 0.89827 1.00313 0.92880 1.18762 0.92198 0.87617 0.86707 1.21701 1.11671 1.24971 0.99207 0.93485 1.25806 1.00745 0.97358 0.95054 1.70051 1.41357 1.36370 1.08975 0.85420 0.78855 0.78491 0.78334 1.19476 1.19288 1.20748 1.73061 1.15406 1.06929 1.24972 1.72583 1.17733 0.96923 1.21375 0.94553 0.89784 0.93637 0.90023 0.86824 0.78853 0.80580 0.91752 0.91374 0.89107 0.96547 0.97217 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.78 71.98 0.70 -2.57 16 2 C -0.05 -1.08 6.35 29.85 0.19 -0.89 16 3 C -0.01 -0.44 6.26 42.70 0.27 -0.17 16 4 C -0.07 -1.69 9.81 22.49 0.22 -1.47 16 5 C -0.19 -5.70 9.35 22.65 0.21 -5.49 16 6 C 0.32 13.85 7.45 133.11 0.99 14.84 16 7 N -0.60 -26.69 2.97 -732.73 -2.18 -28.87 16 8 C 0.09 2.95 10.30 127.77 1.32 4.27 16 9 C 0.27 14.92 5.23 85.63 0.45 15.37 16 10 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 11 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 12 C 0.01 0.55 5.46 84.66 0.46 1.01 16 13 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 14 Si 0.96 46.13 29.54 68.60 2.03 48.16 16 15 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 N -0.35 -17.52 10.27 -55.10 -0.57 -18.08 16 19 N -0.25 -10.56 11.05 -47.57 -0.53 -11.09 16 20 H 0.04 1.03 7.96 -2.39 -0.02 1.02 16 21 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 22 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.11 1.47 7.92 -2.39 -0.02 1.45 16 25 H 0.19 2.59 8.00 -2.91 -0.02 2.56 16 26 H 0.18 3.81 6.14 -2.91 -0.02 3.79 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 29 H 0.09 2.18 6.03 -2.39 -0.01 2.17 16 30 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 31 H 0.01 0.61 7.32 -2.39 -0.02 0.60 16 32 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -76.73 276.01 5.19 -71.53 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.10 Total: 1.96 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.05 Total: -6.57 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -2.98 Total: -115.08 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.73 5.19 -71.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259216137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.941 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds