Wall clock time and date at job start Mon Mar 30 2020 03:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 C 1.50705 * 109.47146 * 119.99892 * 2 1 3 5 5 C 1.38607 * 120.72261 * 119.99638 * 4 2 1 6 6 N 1.32273 * 119.19831 * 179.97438 * 5 4 2 7 7 C 1.32496 * 120.73949 * 0.02562 * 6 5 4 8 8 N 1.38408 * 119.21628 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99924 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 N 1.32489 * 121.56698 * 0.27150 * 7 6 5 19 19 C 1.32281 * 120.74113 * 359.44777 * 18 7 6 20 20 H 1.09000 * 109.47396 * 299.99854 * 1 2 3 21 21 H 1.09006 * 109.47225 * 60.00080 * 1 2 3 22 22 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47291 * 239.99707 * 2 1 3 24 24 H 1.08996 * 109.47149 * 60.00251 * 3 2 1 25 25 H 1.09003 * 109.47250 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47258 * 299.99570 * 3 2 1 27 27 H 1.08000 * 120.39788 * 359.96356 * 5 4 2 28 28 H 0.97000 * 119.99655 * 359.97438 * 8 7 6 29 29 H 1.09002 * 109.47391 * 59.99506 * 9 8 7 30 30 H 1.09001 * 109.46813 * 299.99562 * 9 8 7 31 31 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.40618 * 180.24664 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8300 -1.8386 1.1208 6 7 3.2546 -2.4382 2.2207 7 6 2.9251 -1.9720 3.4164 8 7 3.3873 -2.6238 4.5465 9 6 3.0330 -2.1235 5.8771 10 6 3.6573 -3.0051 6.9279 11 1 4.2583 -3.8529 6.6340 12 6 3.4621 -2.7286 8.2645 13 7 4.0074 -3.4976 9.1814 14 14 2.4233 -1.2617 8.7727 15 1 1.0055 -1.6823 8.9081 16 1 2.9103 -0.7374 10.0739 17 1 2.5281 -0.1993 7.7405 18 7 2.1597 -0.8996 3.5559 19 6 1.7063 -0.2500 2.4966 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 3.1014 -2.2236 0.1489 28 1 3.9453 -3.4123 4.4575 29 1 1.9491 -2.1333 5.9922 30 1 3.4014 -1.1041 5.9918 31 1 3.8698 -3.3033 10.1218 32 1 1.0860 0.6259 2.6166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259246404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:43 Heat of formation + Delta-G solvation = 37.628817 kcal Electronic energy + Delta-G solvation = -14400.462999 eV Core-core repulsion = 11974.752687 eV Total energy + Delta-G solvation = -2425.710312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59633 -36.53580 -34.73615 -33.17877 -32.49022 -29.65849 -27.25213 -27.22126 -24.45223 -23.36901 -21.48461 -20.38565 -18.09414 -17.06704 -16.41852 -15.29448 -14.79887 -14.62972 -14.12150 -13.98250 -13.38973 -13.35991 -13.06978 -12.62003 -12.39980 -12.28696 -12.19272 -11.31462 -11.03855 -10.93324 -10.84784 -10.42187 -10.26050 -9.97459 -9.65868 -9.49101 -8.70549 -8.61212 -7.29997 -6.20982 -4.23316 1.58626 1.60982 3.25896 3.32261 3.39992 3.67798 4.31973 4.32926 4.63327 4.74872 4.80475 4.96787 5.13735 5.14692 5.30011 5.51974 5.53437 5.56354 5.73720 5.84634 5.92343 6.01645 6.15330 6.34399 6.60015 6.84042 7.07343 7.33424 7.37081 7.72487 8.10088 8.47333 8.74672 8.94908 9.38295 10.91161 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048428 B = 0.005994 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.034438 B = 4670.054611 C = 5057.033060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C -0.145 4.145 4 C -0.278 4.278 5 C 0.195 3.805 6 N -0.580 5.580 7 C 0.561 3.439 8 N -0.668 5.668 9 C 0.236 3.764 10 C -0.545 4.545 11 H 0.080 0.920 12 C 0.078 3.922 13 N -0.892 5.892 14 Si 0.878 3.122 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.259 1.259 18 N -0.566 5.566 19 C 0.199 3.801 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.157 0.843 28 H 0.411 0.589 29 H 0.021 0.979 30 H 0.026 0.974 31 H 0.268 0.732 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 8.242 -17.483 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 C -0.202 4.202 4 C -0.287 4.287 5 C 0.026 3.974 6 N -0.304 5.304 7 C 0.204 3.796 8 N -0.299 5.299 9 C 0.113 3.887 10 C -0.583 4.583 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.529 5.529 14 Si 0.704 3.296 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.184 1.184 18 N -0.289 5.289 19 C 0.030 3.970 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.174 0.826 28 H 0.248 0.752 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.439 7.746 -16.121 18.695 hybrid contribution -0.587 0.791 -0.342 1.043 sum -6.026 8.537 -16.464 19.500 Atomic orbital electron populations 1.21875 0.94870 1.01843 1.01604 1.19709 0.95321 0.95392 0.94598 1.21875 1.01180 0.95536 1.01603 1.21014 1.08599 1.02312 0.96802 1.22683 0.89032 0.89457 0.96231 1.67957 1.29293 1.35057 0.98046 1.19624 0.87055 0.86499 0.86458 1.44804 1.52038 1.30158 1.02855 1.19503 0.95920 0.95528 0.77730 1.21099 1.33538 1.13733 0.89958 0.90215 1.24771 0.95215 0.96476 0.96080 1.69884 1.43811 1.38263 1.00955 0.86802 0.80834 0.83434 0.78520 1.19865 1.20927 1.18370 1.68052 1.16260 1.10316 1.34311 1.22660 0.91902 0.95587 0.86892 0.92599 0.92664 0.92694 0.90757 0.92599 0.92693 0.92664 0.82628 0.75196 0.96079 0.95620 0.92237 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.01 37.16 0.33 -0.90 16 2 C -0.03 -0.28 3.12 -91.77 -0.29 -0.57 16 3 C -0.14 -1.24 9.01 37.16 0.33 -0.90 16 4 C -0.28 -3.62 4.79 -104.35 -0.50 -4.12 16 5 C 0.20 2.79 10.95 -17.23 -0.19 2.61 16 6 N -0.58 -10.64 10.46 -13.93 -0.15 -10.78 16 7 C 0.56 11.56 8.43 -322.81 -2.72 8.84 16 8 N -0.67 -14.87 5.70 -63.49 -0.36 -15.23 16 9 C 0.24 5.87 4.47 -5.19 -0.02 5.85 16 10 C -0.55 -15.31 9.83 -34.44 -0.34 -15.65 16 11 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 12 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 13 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 14 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 18 N -0.57 -11.21 9.59 -13.93 -0.13 -11.34 16 19 C 0.20 3.03 10.02 -17.22 -0.17 2.86 16 20 H 0.05 0.49 7.47 -51.93 -0.39 0.10 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 24 H 0.05 0.49 7.47 -51.93 -0.39 0.10 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.16 1.66 8.00 -52.49 -0.42 1.24 16 28 H 0.41 8.76 8.44 -40.82 -0.34 8.42 16 29 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.16 1.89 7.27 -52.49 -0.38 1.51 16 LS Contribution 273.10 15.07 4.12 4.12 Total: -1.00 -31.09 273.10 -8.45 -39.54 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.37 Total: 2.88 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.66 Total: 0.15 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.13 Total: -63.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.09 -8.45 -39.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259246404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.171 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds