Wall clock time and date at job start Mon Mar 30 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 C 1.50705 * 109.47146 * 119.99892 * 2 1 3 5 5 C 1.38607 * 120.72261 * 119.99638 * 4 2 1 6 6 N 1.32273 * 119.19831 * 179.97438 * 5 4 2 7 7 C 1.32496 * 120.73949 * 0.02562 * 6 5 4 8 8 N 1.38408 * 119.21628 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99924 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 N 1.32489 * 121.56698 * 0.27150 * 7 6 5 19 19 C 1.32281 * 120.74113 * 359.44777 * 18 7 6 20 20 H 1.09000 * 109.47396 * 299.99854 * 1 2 3 21 21 H 1.09006 * 109.47225 * 60.00080 * 1 2 3 22 22 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47291 * 239.99707 * 2 1 3 24 24 H 1.08996 * 109.47149 * 60.00251 * 3 2 1 25 25 H 1.09003 * 109.47250 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47258 * 299.99570 * 3 2 1 27 27 H 1.08000 * 120.39788 * 359.96356 * 5 4 2 28 28 H 0.97000 * 119.99655 * 359.97438 * 8 7 6 29 29 H 1.09002 * 109.47391 * 59.99506 * 9 8 7 30 30 H 1.09001 * 109.46813 * 299.99562 * 9 8 7 31 31 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.40618 * 180.24664 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8300 -1.8386 1.1208 6 7 3.2546 -2.4382 2.2207 7 6 2.9251 -1.9720 3.4164 8 7 3.3873 -2.6238 4.5465 9 6 3.0330 -2.1235 5.8771 10 6 3.6573 -3.0051 6.9279 11 1 4.2583 -3.8529 6.6340 12 6 3.4621 -2.7286 8.2645 13 7 4.0074 -3.4976 9.1814 14 14 2.4233 -1.2617 8.7727 15 1 1.0055 -1.6823 8.9081 16 1 2.9103 -0.7374 10.0739 17 1 2.5281 -0.1993 7.7405 18 7 2.1597 -0.8996 3.5559 19 6 1.7063 -0.2500 2.4966 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 3.1014 -2.2236 0.1489 28 1 3.9453 -3.4123 4.4575 29 1 1.9491 -2.1333 5.9922 30 1 3.4014 -1.1041 5.9918 31 1 3.8698 -3.3033 10.1218 32 1 1.0860 0.6259 2.6166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259246404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:42 Heat of formation + Delta-G solvation = 18.264521 kcal Electronic energy + Delta-G solvation = -14401.302698 eV Core-core repulsion = 11974.752687 eV Total energy + Delta-G solvation = -2426.550011 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90087 -37.78341 -36.15230 -34.56043 -34.46677 -31.13031 -28.96969 -27.87527 -25.72783 -24.85636 -23.25106 -21.33806 -19.77011 -18.51075 -18.16701 -16.66633 -16.24861 -16.17684 -15.34048 -15.24390 -14.82782 -14.66005 -14.43722 -14.23767 -13.85549 -13.17311 -12.96872 -12.92207 -12.73760 -12.03978 -11.89822 -11.78244 -11.74559 -11.67184 -11.34135 -11.12986 -10.80425 -9.94272 -8.79629 -8.40558 -6.48862 0.31473 0.36333 1.34754 1.35446 1.49647 2.15503 2.29303 2.93309 3.01502 3.39799 3.83079 3.88923 3.96593 4.02616 4.42243 4.56715 4.70283 4.75862 4.89339 4.91126 5.06525 5.10015 5.14003 5.25724 5.27266 5.49170 5.49239 5.57222 5.81363 6.15424 6.25446 6.53049 6.77120 7.14975 7.50354 8.74947 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048428 B = 0.005994 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.034438 B = 4670.054611 C = 5057.033060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.028 4.028 3 C -0.144 4.144 4 C -0.249 4.249 5 C 0.184 3.816 6 N -0.595 5.595 7 C 0.539 3.461 8 N -0.687 5.687 9 C 0.259 3.741 10 C -0.555 4.555 11 H 0.048 0.952 12 C 0.024 3.976 13 N -0.935 5.935 14 Si 0.947 3.053 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.252 1.252 18 N -0.599 5.599 19 C 0.184 3.816 20 H 0.052 0.948 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.197 0.803 28 H 0.409 0.591 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.273 0.727 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 10.279 -19.838 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.047 4.047 3 C -0.201 4.201 4 C -0.257 4.257 5 C 0.017 3.983 6 N -0.319 5.319 7 C 0.183 3.817 8 N -0.320 5.320 9 C 0.135 3.865 10 C -0.593 4.593 11 H 0.066 0.934 12 C -0.176 4.176 13 N -0.573 5.573 14 Si 0.769 3.231 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.176 1.176 18 N -0.323 5.323 19 C 0.017 3.983 20 H 0.071 0.929 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.214 0.786 28 H 0.246 0.754 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.931 9.816 -18.565 22.115 hybrid contribution -0.139 0.168 0.156 0.268 sum -7.070 9.984 -18.409 22.103 Atomic orbital electron populations 1.21871 0.93904 1.01723 1.02611 1.19846 0.95973 0.95718 0.93210 1.21871 1.00747 0.94887 1.02609 1.21481 1.05708 1.00908 0.97609 1.23463 0.88645 0.89664 0.96542 1.67952 1.29840 1.35831 0.98246 1.19626 0.88240 0.87268 0.86601 1.44473 1.53859 1.31059 1.02645 1.18993 0.94853 0.94121 0.78503 1.21327 1.33244 1.13370 0.91318 0.93397 1.25683 0.96424 0.99496 0.95986 1.70006 1.45448 1.40322 1.01568 0.85724 0.79234 0.79696 0.78436 1.18812 1.19870 1.17571 1.67999 1.16938 1.10670 1.36653 1.23231 0.92023 0.96120 0.86910 0.92855 0.90530 0.93394 0.88645 0.92859 0.93397 0.90528 0.78649 0.75437 0.96734 0.96575 0.91781 0.80041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.01 71.98 0.65 -1.25 16 2 C -0.03 -0.40 3.12 -11.54 -0.04 -0.44 16 3 C -0.14 -1.90 9.01 71.98 0.65 -1.25 16 4 C -0.25 -5.76 4.79 -19.69 -0.09 -5.85 16 5 C 0.18 4.80 10.95 84.71 0.93 5.73 16 6 N -0.60 -21.41 10.46 -197.99 -2.07 -23.48 16 7 C 0.54 22.36 8.43 261.49 2.20 24.56 16 8 N -0.69 -31.60 5.70 -354.78 -2.02 -33.62 16 9 C 0.26 13.22 4.47 85.63 0.38 13.60 16 10 C -0.55 -32.28 9.83 25.60 0.25 -32.03 16 11 H 0.05 3.01 7.84 -2.91 -0.02 2.98 16 12 C 0.02 1.40 5.47 84.66 0.46 1.86 16 13 N -0.93 -57.51 13.96 21.45 0.30 -57.21 16 14 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 15 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 18 N -0.60 -23.37 9.59 -197.98 -1.90 -25.27 16 19 C 0.18 5.24 10.02 84.71 0.85 6.09 16 20 H 0.05 0.74 7.47 -2.39 -0.02 0.72 16 21 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.10 1.07 7.94 -2.38 -0.02 1.05 16 24 H 0.05 0.74 7.47 -2.39 -0.02 0.72 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.20 3.39 8.00 -2.91 -0.02 3.37 16 28 H 0.41 18.40 8.44 -92.71 -0.78 17.62 16 29 H 0.01 0.76 7.57 -2.39 -0.02 0.74 16 30 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 31 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.18 3.97 7.27 -2.91 -0.02 3.95 16 Total: -1.00 -68.97 273.10 2.72 -66.25 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.28 Total: 16.10 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.24 Total: 11.02 kcal Atomic # 7 Polarization: -133.89 SS G_CDS: -5.69 Total: -139.58 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -68.97 2.72 -66.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259246404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.518 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds