Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47122 * 2 1 4 4 C 1.52997 * 109.47230 * 120.00258 * 2 1 3 5 5 C 1.50702 * 109.47263 * 65.00048 * 4 2 1 6 6 C 1.38660 * 120.72333 * 89.99406 * 5 4 2 7 7 N 1.32234 * 119.19831 * 179.97438 * 6 5 4 8 8 C 1.32540 * 120.73784 * 0.02562 * 7 6 5 9 9 N 1.38444 * 119.21088 * 179.97438 * 8 7 6 10 10 C 1.36987 * 119.99796 * 179.71914 * 9 8 7 11 11 H 1.08002 * 119.99655 * 0.27440 * 10 9 8 12 12 C 1.38825 * 119.99990 * 180.27518 * 10 9 8 13 13 N 1.31544 * 120.00340 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00071 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46793 * 60.00020 * 14 12 10 16 16 H 1.48494 * 109.47228 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47130 * 300.00231 * 14 12 10 18 18 N 1.32526 * 121.57130 * 0.24901 * 8 7 6 19 19 C 1.32237 * 120.74593 * 359.48167 * 18 8 7 20 20 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47348 * 299.99336 * 1 2 3 22 22 H 1.08996 * 109.47613 * 60.00087 * 1 2 3 23 23 H 1.09004 * 109.46991 * 240.00256 * 2 1 3 24 24 H 1.08999 * 109.47397 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47461 * 300.00683 * 3 2 1 26 26 H 1.09004 * 109.46979 * 60.00248 * 3 2 1 27 27 H 1.08994 * 109.47241 * 305.00239 * 4 2 1 28 28 H 1.09002 * 109.47329 * 184.99817 * 4 2 1 29 29 H 1.08006 * 120.40227 * 359.96182 * 6 5 4 30 30 H 0.97001 * 120.00479 * 0.02562 * 9 8 7 31 31 H 0.96999 * 120.00222 * 180.02562 * 13 12 10 32 32 H 1.07994 * 120.40987 * 180.25595 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1734 1.1888 6 6 2.4725 -3.1121 0.5965 7 7 2.0929 -4.3783 0.5607 8 6 0.9334 -4.7530 1.0820 9 7 0.5672 -6.0870 1.0265 10 6 -0.6250 -6.4929 1.5654 11 1 -1.2812 -5.7716 2.0295 12 6 -0.9896 -7.8315 1.5148 13 7 -0.1901 -8.7102 0.9499 14 14 -2.6157 -8.3850 2.2490 15 1 -3.7317 -7.6831 1.5656 16 1 -2.7672 -9.8510 2.0675 17 1 -2.6404 -8.0609 3.6980 18 7 0.1138 -3.8803 1.6503 19 6 0.4354 -2.5997 1.7241 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6054 -0.2619 2.1369 28 1 3.1264 -0.6444 1.2951 29 1 3.4182 -2.8127 0.1695 30 1 1.1568 -6.7349 0.6100 31 1 -0.4450 -9.6454 0.9143 32 1 -0.2348 -1.8939 2.1921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259332461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = 14.886135 kcal Electronic energy + Delta-G solvation = -14506.485450 eV Core-core repulsion = 12079.788941 eV Total energy + Delta-G solvation = -2426.696509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.49381 -37.88194 -36.62336 -34.16141 -33.85539 -31.64098 -27.93914 -27.66177 -26.07152 -25.01047 -22.96202 -20.75003 -19.97826 -18.88957 -17.74546 -16.48597 -16.00469 -15.79785 -15.57436 -15.11105 -15.03207 -14.70709 -13.96369 -13.53322 -13.42843 -13.08948 -12.92517 -12.64597 -12.45798 -12.23175 -12.11993 -11.98094 -11.60943 -11.48208 -11.38491 -11.12282 -10.60576 -9.59707 -8.96525 -8.51657 -5.82518 0.57169 0.70055 1.40951 1.49943 1.53649 2.23195 2.84734 2.89355 3.47225 3.76562 4.04601 4.12174 4.18239 4.26546 4.43363 4.56675 4.72060 4.91047 4.94732 5.01782 5.11962 5.17036 5.22669 5.35125 5.39352 5.43639 5.59536 5.66531 5.71572 6.04243 6.57599 6.70247 7.16929 7.38718 8.01040 8.66619 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054696 B = 0.005915 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.798444 B = 4732.432340 C = 5057.540759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.036 4.036 5 C -0.297 4.297 6 C 0.185 3.815 7 N -0.622 5.622 8 C 0.487 3.513 9 N -0.537 5.537 10 C -0.306 4.306 11 H 0.105 0.895 12 C -0.028 4.028 13 N -0.928 5.928 14 Si 1.008 2.992 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.266 1.266 18 N -0.605 5.605 19 C 0.188 3.812 20 H 0.031 0.969 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.181 0.819 30 H 0.401 0.599 31 H 0.278 0.722 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 16.412 0.110 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.074 4.074 5 C -0.309 4.309 6 C 0.016 3.984 7 N -0.348 5.348 8 C 0.132 3.868 9 N -0.151 5.151 10 C -0.436 4.436 11 H 0.123 0.877 12 C -0.227 4.227 13 N -0.567 5.567 14 Si 0.830 3.170 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.191 1.191 18 N -0.330 5.330 19 C 0.018 3.982 20 H 0.050 0.950 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.198 0.802 30 H 0.236 0.764 31 H 0.087 0.913 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.960 14.950 0.095 15.079 hybrid contribution -0.138 -0.256 -0.053 0.295 sum 1.822 14.695 0.042 14.807 Atomic orbital electron populations 1.21866 0.95974 1.00567 1.01998 1.21101 0.95515 0.96585 0.97745 1.21794 1.01279 0.94625 1.02077 1.20216 1.01221 0.87831 0.98166 1.21076 0.99019 0.99133 1.11631 1.23107 0.98498 0.86262 0.90549 1.67809 1.17805 1.21568 1.27666 1.19458 0.87222 0.87463 0.92667 1.40513 1.19540 1.02397 1.52635 1.19993 0.95715 0.93836 1.34103 0.87735 1.26308 1.03452 0.95085 0.97865 1.69787 1.38983 1.03698 1.44221 0.84761 0.76419 0.77106 0.78691 1.19137 1.20032 1.19100 1.67871 1.35703 1.04201 1.25249 1.23127 0.93956 0.90288 0.90807 0.94997 0.91588 0.92768 0.92645 0.91977 0.92648 0.91969 0.90476 0.90177 0.80243 0.76415 0.91270 0.81020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.80 71.98 0.63 -2.51 16 2 C -0.09 -1.80 2.91 -10.80 -0.03 -1.83 16 3 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 4 C -0.04 -0.76 4.88 29.85 0.15 -0.61 16 5 C -0.30 -9.30 4.73 -19.66 -0.09 -9.39 16 6 C 0.19 6.58 11.00 84.73 0.93 7.51 16 7 N -0.62 -28.68 10.46 -197.88 -2.07 -30.75 16 8 C 0.49 25.05 8.38 261.43 2.19 27.24 16 9 N -0.54 -30.16 5.43 -194.35 -1.05 -31.21 16 10 C -0.31 -17.38 9.69 84.03 0.81 -16.57 16 11 H 0.10 5.94 7.05 -2.91 -0.02 5.92 16 12 C -0.03 -1.50 5.50 84.88 0.47 -1.03 16 13 N -0.93 -52.64 13.05 21.65 0.28 -52.36 16 14 Si 1.01 42.89 29.55 68.60 2.03 44.92 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 N -0.60 -28.83 9.10 -197.88 -1.80 -30.63 16 19 C 0.19 6.88 9.31 84.73 0.79 7.67 16 20 H 0.03 0.86 6.28 -2.39 -0.01 0.84 16 21 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 28 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 29 H 0.18 4.85 8.06 -2.91 -0.02 4.83 16 30 H 0.40 23.14 8.01 -92.71 -0.74 22.40 16 31 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.17 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -64.68 274.12 4.26 -60.42 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.37 Total: 30.55 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 6.51 Total: 9.07 kcal Atomic # 7 Polarization: -140.31 SS G_CDS: -4.64 Total: -144.95 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -64.68 4.26 -60.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259332461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.307 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds