Wall clock time and date at job start Mon Mar 30 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47562 * 2 1 4 4 C 1.38604 * 120.71894 * 89.99941 * 3 2 1 5 5 N 1.32271 * 119.19680 * 180.02562 * 4 3 2 6 6 C 1.32493 * 120.74465 * 0.02562 * 5 4 3 7 7 N 1.38399 * 119.22299 * 179.97438 * 6 5 4 8 8 C 1.46502 * 119.99967 * 359.97438 * 7 6 5 9 9 C 1.46499 * 120.00374 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.46992 * 269.99856 * 9 7 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 N 1.32501 * 121.55921 * 0.27514 * 6 5 4 19 19 C 1.32275 * 120.73908 * 359.44192 * 18 6 5 20 20 H 1.09001 * 109.46732 * 59.99431 * 1 2 3 21 21 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46605 * 300.00177 * 1 2 3 23 23 H 1.09003 * 109.47313 * 239.99933 * 2 1 3 24 24 H 1.09004 * 109.47447 * 120.00473 * 2 1 3 25 25 H 1.08008 * 120.40447 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47461 * 270.00276 * 8 7 6 27 27 H 1.08998 * 109.46888 * 30.00045 * 8 7 6 28 28 H 1.08994 * 109.47490 * 150.00107 * 8 7 6 29 29 H 1.09002 * 109.47391 * 149.99847 * 9 7 6 30 30 H 1.09001 * 109.46813 * 29.99903 * 9 7 6 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 1.08001 * 120.39796 * 180.25492 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2685 2.0883 1.1916 5 7 2.7088 3.3351 1.1564 6 6 2.9235 3.9452 0.0001 7 7 3.3840 5.2504 0.0001 8 6 3.6277 5.9412 1.2688 9 6 3.6266 5.9416 -1.2686 10 6 5.0497 5.7059 -1.7048 11 1 5.7075 5.1014 -1.0980 12 6 5.5117 6.2613 -2.8792 13 7 4.7106 6.9970 -3.6184 14 14 7.2755 5.9686 -3.4203 15 1 7.3384 4.7477 -4.2634 16 1 7.7533 7.1363 -4.2036 17 1 8.1369 5.7890 -2.2242 18 7 2.7023 3.3374 -1.1563 19 6 2.2670 2.0888 -1.1915 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.0950 1.5964 2.1373 26 1 2.7190 6.4543 1.5836 27 1 3.9163 5.2147 2.0284 28 1 4.4290 6.6684 1.1386 29 1 3.4590 7.0107 -1.1378 30 1 2.9454 5.5572 -2.0278 31 1 5.0357 7.3880 -4.4445 32 1 2.0924 1.5974 -2.1372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259372535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:51 Heat of formation + Delta-G solvation = 50.212980 kcal Electronic energy + Delta-G solvation = -14686.444990 eV Core-core repulsion = 12261.280368 eV Total energy + Delta-G solvation = -2425.164622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32329 -36.29637 -33.96099 -33.03957 -32.45468 -29.12719 -27.82371 -25.60463 -24.07907 -23.35974 -22.00549 -20.43675 -17.09620 -16.89778 -16.39698 -14.83895 -14.61598 -14.46366 -14.04129 -13.84894 -13.29824 -13.10633 -12.80334 -12.38973 -12.10646 -11.80881 -11.50429 -11.19933 -11.02556 -10.86139 -10.58342 -10.19519 -10.18117 -10.05580 -9.82433 -9.07856 -8.45719 -8.28125 -6.93839 -6.01625 -4.07867 1.81005 1.83047 3.30959 3.36683 3.39858 3.67518 4.43258 4.56272 4.83832 5.05838 5.09152 5.17161 5.30190 5.40497 5.50249 5.71091 5.78355 5.93364 6.01421 6.09996 6.13415 6.25194 6.40818 6.45239 6.81784 7.10792 7.43542 7.62746 7.82511 7.95296 8.24468 8.38117 8.91010 9.11448 9.56514 11.04190 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034680 B = 0.007256 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.192010 B = 3858.041312 C = 4248.940415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.288 4.288 4 C 0.190 3.810 5 N -0.585 5.585 6 C 0.566 3.434 7 N -0.566 5.566 8 C 0.106 3.894 9 C 0.255 3.745 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.275 1.275 18 N -0.544 5.544 19 C 0.195 3.805 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.152 0.848 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.263 0.737 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -10.276 7.536 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.297 4.297 4 C 0.021 3.979 5 N -0.308 5.308 6 C 0.211 3.789 7 N -0.278 5.278 8 C -0.038 4.038 9 C 0.135 3.865 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.200 1.200 18 N -0.264 5.264 19 C 0.024 3.976 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.170 0.830 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.683 -8.857 7.356 12.840 hybrid contribution 0.726 -1.001 -0.420 1.306 sum -4.957 -9.858 6.936 13.033 Atomic orbital electron populations 1.21786 0.95621 1.00986 1.02012 1.20100 0.95266 0.91976 1.02170 1.21031 1.13324 0.99668 0.95706 1.22567 0.89190 0.88800 0.97367 1.67910 1.22299 1.11553 1.29070 1.19408 0.87800 0.87555 0.84121 1.46806 1.64093 1.07738 1.09125 1.21473 0.99997 0.96904 0.85405 1.19387 0.97136 0.91322 0.78609 1.21427 0.96586 1.31461 1.06661 0.92683 1.24901 0.97837 0.95063 0.96143 1.69931 1.35541 1.33634 1.14317 0.86516 0.84611 0.77736 0.78650 1.20608 1.21125 1.20020 1.68137 1.19057 1.10716 1.28525 1.22781 0.88398 0.88950 0.97484 0.92750 0.92926 0.92915 0.91507 0.91682 0.83035 0.94171 0.91448 0.91154 0.94914 0.93148 0.92739 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.06 -0.60 6.11 -27.88 -0.17 -0.77 16 3 C -0.29 -4.26 5.17 -104.35 -0.54 -4.80 16 4 C 0.19 2.99 11.00 -17.23 -0.19 2.80 16 5 N -0.58 -11.45 9.11 -13.93 -0.13 -11.58 16 6 C 0.57 12.71 8.17 -322.81 -2.64 10.07 16 7 N -0.57 -13.16 2.96 -185.32 -0.55 -13.71 16 8 C 0.11 2.02 10.44 59.85 0.62 2.65 16 9 C 0.25 6.78 5.17 -5.19 -0.03 6.75 16 10 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 11 H 0.05 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 14 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 N -0.54 -12.19 9.11 -13.93 -0.13 -12.31 16 19 C 0.19 3.42 11.00 -17.23 -0.19 3.23 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 24 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 25 H 0.15 1.82 8.06 -52.48 -0.42 1.39 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.21 7.33 -51.93 -0.38 0.83 16 28 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.46 7.33 -51.93 -0.38 1.07 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -31.86 278.94 -8.59 -40.44 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -4.52 Total: -3.54 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.18 Total: 5.30 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.07 Total: -63.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.86 -8.59 -40.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259372535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.656 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds