Wall clock time and date at job start Mon Mar 30 2020 02:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35966 * 126.22589 * 2 1 4 4 H 0.97008 * 126.07014 * 0.02562 * 3 2 1 5 5 N 1.40071 * 107.85707 * 180.26365 * 3 2 1 6 6 C 1.30862 * 108.36298 * 359.77564 * 5 3 2 7 7 C 1.35705 * 126.22279 * 179.88463 * 2 1 3 8 8 N 1.40803 * 126.06569 * 359.97438 * 7 2 1 9 9 C 1.48811 * 111.18714 * 311.59098 * 8 7 2 10 10 C 1.54936 * 103.34751 * 159.50367 * 9 8 7 11 11 C 1.54600 * 102.92342 * 322.68779 * 10 9 8 12 12 C 1.47904 * 110.99455 * 68.92725 * 8 7 2 13 13 H 1.08999 * 109.91973 * 333.70052 * 12 8 7 14 14 C 1.50696 * 109.92036 * 94.80268 * 12 8 7 15 15 H 1.08007 * 119.99886 * 359.59078 * 14 12 8 16 16 C 1.37876 * 120.00623 * 179.59465 * 14 12 8 17 17 N 1.31514 * 119.99299 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00274 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47040 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47399 * 299.99924 * 18 16 14 21 21 H 1.48495 * 109.47180 * 60.00334 * 18 16 14 22 22 H 1.09006 * 109.46771 * 273.96692 * 1 2 3 23 23 H 1.09004 * 109.46736 * 33.95711 * 1 2 3 24 24 H 1.08992 * 109.47492 * 153.96107 * 1 2 3 25 25 H 1.07998 * 125.82025 * 179.97438 * 6 5 3 26 26 H 1.08996 * 110.51756 * 41.07027 * 9 8 7 27 27 H 1.08992 * 110.83701 * 278.08854 * 9 8 7 28 28 H 1.08998 * 110.72459 * 204.33351 * 10 9 8 29 29 H 1.09009 * 110.72484 * 81.04511 * 10 9 8 30 30 H 1.08992 * 110.30775 * 263.04156 * 11 10 9 31 31 H 1.09001 * 110.39139 * 140.91281 * 11 10 9 32 32 H 0.96993 * 120.00816 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3106 1.0968 0.0000 4 1 2.0156 2.0210 0.0004 5 7 3.6399 0.6554 -0.0061 6 6 3.6398 -0.6532 -0.0048 7 6 2.3090 -1.0948 0.0022 8 7 1.8806 -2.4360 0.0054 9 6 0.8400 -2.6658 1.0440 10 6 0.1357 -3.9599 0.5646 11 6 0.1185 -3.7950 -0.9725 12 6 1.2460 -2.7927 -1.2821 13 1 0.8312 -1.9007 -1.7514 14 6 2.2613 -3.4285 -2.1962 15 1 3.2820 -3.5535 -1.8659 16 6 1.8875 -3.8508 -3.4544 17 7 0.6447 -3.6981 -3.8568 18 14 3.1463 -4.6382 -4.5878 19 1 2.4968 -5.0006 -5.8731 20 1 4.2499 -3.6785 -4.8447 21 1 3.6929 -5.8611 -3.9468 22 1 -0.3633 0.0711 1.0253 23 1 -0.3633 0.8525 -0.5741 24 1 -0.3634 -0.9233 -0.4511 25 1 4.5154 -1.2853 -0.0089 26 1 0.1373 -1.8330 1.0716 27 1 1.2955 -2.8158 2.0228 28 1 -0.8794 -4.0150 0.9579 29 1 0.7101 -4.8407 0.8516 30 1 -0.8420 -3.3969 -1.2995 31 1 0.3171 -4.7499 -1.4591 32 1 -0.0087 -3.2882 -3.2688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:59 Heat of formation + Delta-G solvation = 55.751926 kcal Electronic energy + Delta-G solvation = -15564.483910 eV Core-core repulsion = 13139.559475 eV Total energy + Delta-G solvation = -2424.924435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.31102 -39.46435 -35.04859 -33.45271 -33.05802 -30.15816 -29.48477 -27.49649 -26.04171 -22.92243 -22.34762 -21.54247 -20.58285 -18.86748 -18.34127 -16.51458 -16.14581 -15.81353 -15.57802 -15.32792 -15.16525 -14.39517 -13.87585 -13.54794 -13.45815 -13.32244 -13.02984 -12.80533 -12.65528 -12.16322 -11.97473 -11.81780 -11.74662 -11.43421 -10.69408 -10.41050 -10.38031 -9.33964 -9.01816 -8.50295 -6.20179 0.80896 1.54757 1.62201 1.76055 1.81402 1.94507 2.60286 3.25897 3.37368 3.77599 3.90889 4.06228 4.11738 4.18328 4.31667 4.52068 4.60443 4.77440 4.80664 4.85484 4.97626 5.02250 5.15441 5.19525 5.32554 5.46327 5.58992 5.95337 6.24348 6.39386 6.46707 6.57589 6.80202 6.87905 7.55776 8.87909 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.011201 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.498867 B = 2499.166989 C = 3022.496035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.052 3.948 3 N -0.468 5.468 4 H 0.450 0.550 5 N -0.313 5.313 6 C 0.060 3.940 7 C -0.067 4.067 8 N -0.455 5.455 9 C 0.028 3.972 10 C -0.112 4.112 11 C -0.116 4.116 12 C 0.200 3.800 13 H -0.024 1.024 14 C -0.583 4.583 15 H 0.040 0.960 16 C -0.031 4.031 17 N -0.941 5.941 18 Si 1.109 2.891 19 H -0.284 1.284 20 H -0.280 1.280 21 H -0.272 1.272 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.186 0.814 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 6.163 9.584 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 N -0.181 5.181 4 H 0.297 0.703 5 N -0.136 5.136 6 C -0.126 4.126 7 C -0.172 4.172 8 N -0.176 5.176 9 C -0.099 4.099 10 C -0.150 4.150 11 C -0.155 4.155 12 C 0.094 3.906 13 H -0.006 1.006 14 C -0.621 4.621 15 H 0.058 0.942 16 C -0.229 4.229 17 N -0.579 5.579 18 Si 0.933 3.067 19 H -0.210 1.210 20 H -0.206 1.206 21 H -0.197 1.197 22 H 0.126 0.874 23 H 0.110 0.890 24 H 0.086 0.914 25 H 0.203 0.797 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.881 6.203 8.182 10.306 hybrid contribution -1.352 0.823 0.999 1.872 sum -2.233 7.026 9.181 11.775 Atomic orbital electron populations 1.20681 0.85562 1.04102 1.04632 1.21959 0.95759 0.88099 1.02023 1.46100 1.03329 1.08263 1.60400 0.70297 1.77150 0.97917 1.12397 1.26147 1.23895 0.98246 0.91689 0.98779 1.19163 0.93212 0.89790 1.15081 1.62335 1.35516 1.15208 1.04588 1.23570 0.93149 0.97561 0.95586 1.22439 1.00726 0.97702 0.94105 1.22450 0.97023 0.99668 0.96357 1.19959 0.91813 0.92082 0.86742 1.00602 1.22239 0.96987 1.41849 1.01053 0.94155 1.26977 1.00576 0.96607 0.98695 1.70895 1.03494 1.43586 1.39956 0.83007 0.72991 0.76329 0.74400 1.20997 1.20555 1.19717 0.87416 0.88978 0.91376 0.79705 0.91752 0.89911 0.89101 0.91724 0.93985 0.94239 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 8.37 71.24 0.60 -1.78 16 2 C 0.05 1.75 6.74 41.33 0.28 2.02 16 3 N -0.47 -14.18 7.41 -47.24 -0.35 -14.53 16 4 H 0.45 9.76 8.96 -213.33 -1.91 7.85 16 5 N -0.31 -11.34 12.69 -56.78 -0.72 -12.06 16 6 C 0.06 2.37 12.03 85.32 1.03 3.39 16 7 C -0.07 -2.70 5.02 37.59 0.19 -2.51 16 8 N -0.45 -19.63 5.02 -663.22 -3.33 -22.96 16 9 C 0.03 0.95 6.15 86.59 0.53 1.48 16 10 C -0.11 -3.90 7.06 31.80 0.22 -3.67 16 11 C -0.12 -5.24 4.98 31.48 0.16 -5.08 16 12 C 0.20 10.01 1.36 44.31 0.06 10.07 16 13 H -0.02 -1.28 6.19 -2.39 -0.01 -1.30 16 14 C -0.58 -33.47 8.69 25.60 0.22 -33.25 16 15 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 16 C -0.03 -1.77 5.09 84.65 0.43 -1.34 16 17 N -0.94 -56.82 13.30 21.45 0.29 -56.53 16 18 Si 1.11 51.81 29.90 68.60 2.05 53.87 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H 0.11 2.11 7.70 -2.38 -0.02 2.09 16 23 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 24 H 0.07 2.14 5.36 -2.39 -0.01 2.12 16 25 H 0.19 6.81 8.06 -2.91 -0.02 6.79 16 26 H 0.06 1.93 4.33 -2.39 -0.01 1.92 16 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.04 1.83 7.85 -2.39 -0.02 1.81 16 31 H 0.04 2.02 7.27 -2.39 -0.02 2.01 16 32 H 0.26 15.59 5.94 -92.71 -0.55 15.04 16 Total: -1.00 -69.53 257.17 1.09 -68.43 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.56 Total: 14.44 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 3.72 Total: -30.65 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -4.12 Total: -106.08 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.87 kcal Total: -69.53 1.09 -68.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.185 kcal (2) G-P(sol) polarization free energy of solvation -69.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds