Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 C 1.52999 * 109.47527 * 119.99901 * 2 1 3 5 5 C 1.50702 * 109.47097 * 64.99866 * 4 2 1 6 6 C 1.38637 * 120.32296 * 125.00306 * 5 4 2 7 7 C 1.40095 * 118.60802 * 179.97438 * 6 5 4 8 8 N 1.38521 * 120.46002 * 180.02562 * 7 6 5 9 9 N 1.32556 * 119.08099 * 359.97438 * 7 6 5 10 10 C 1.33434 * 120.56221 * 359.97438 * 9 7 6 11 11 C 1.41579 * 119.24423 * 179.72247 * 10 9 7 12 12 H 1.08000 * 120.00037 * 180.02562 * 11 10 9 13 13 C 1.40061 * 120.00125 * 0.02562 * 11 10 9 14 14 N 1.30689 * 119.99712 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99902 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47311 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47087 * 120.00216 * 15 13 11 18 18 H 1.48499 * 109.46728 * 239.99861 * 15 13 11 19 19 N 1.32071 * 120.32237 * 304.98258 * 5 4 2 20 20 H 1.09000 * 109.46653 * 300.00031 * 1 2 3 21 21 H 1.09000 * 109.47320 * 60.00126 * 1 2 3 22 22 H 1.08994 * 109.46633 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47094 * 240.00260 * 2 1 3 24 24 H 1.08992 * 109.47401 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46910 * 300.00125 * 3 2 1 26 26 H 1.08996 * 109.47277 * 59.99489 * 3 2 1 27 27 H 1.09002 * 109.46588 * 305.00489 * 4 2 1 28 28 H 1.08998 * 109.47282 * 185.00191 * 4 2 1 29 29 H 1.08006 * 120.69433 * 359.97438 * 6 5 4 30 30 H 0.96997 * 120.00191 * 179.97438 * 8 7 6 31 31 H 0.97002 * 119.99692 * 359.97438 * 8 7 6 32 32 H 0.97003 * 119.99643 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6415 -2.1733 1.1889 6 6 2.6008 -3.1678 1.3014 7 6 2.1902 -4.5058 1.2410 8 7 3.1164 -5.5302 1.3498 9 7 0.9030 -4.7781 1.0794 10 6 0.0090 -3.7930 0.9760 11 6 -1.3581 -4.1156 0.7981 12 1 -2.0921 -3.3279 0.7125 13 6 -1.7586 -5.4561 0.7330 14 7 -0.8704 -6.4092 0.8360 15 14 -3.5622 -5.8816 0.4975 16 1 -4.3584 -4.6312 0.4090 17 1 -3.7270 -6.6637 -0.7540 18 1 -4.0351 -6.6883 1.6512 19 7 0.3747 -2.5109 1.0288 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6054 -0.2617 2.1369 28 1 3.1264 -0.6442 1.2951 29 1 3.6429 -2.9162 1.4329 30 1 2.8247 -6.4543 1.3074 31 1 4.0566 -5.3233 1.4683 32 1 -1.1478 -7.3376 0.7906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259847787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = 28.628574 kcal Electronic energy + Delta-G solvation = -14937.089258 eV Core-core repulsion = 12510.988667 eV Total energy + Delta-G solvation = -2426.100592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.97980 -35.94422 -34.24118 -33.21731 -30.89306 -29.15004 -26.75129 -26.50819 -25.76581 -21.57643 -20.98615 -19.43906 -17.47672 -16.61021 -15.55891 -14.91712 -14.44117 -13.96604 -13.67916 -13.47271 -13.26165 -12.87952 -12.63808 -11.82519 -11.54986 -11.42812 -11.27010 -11.03335 -10.63331 -10.48338 -10.37845 -10.14798 -10.08217 -9.98166 -9.23635 -8.70783 -7.98564 -7.14775 -7.03505 -6.39531 -4.62484 2.78198 3.11372 3.13307 3.17389 3.28650 3.96355 4.71286 4.78262 5.37105 5.45571 5.48654 5.83963 5.97233 6.08793 6.16793 6.20806 6.32699 6.39139 6.49963 6.60305 6.67082 6.74375 6.82972 6.94605 7.18071 7.30018 7.43500 7.72449 8.19375 8.25312 8.57166 8.73095 8.90048 9.39197 10.27089 10.51025 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.009576 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.745575 B = 2923.280682 C = 3894.993028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.055 4.055 5 C 0.208 3.792 6 C -0.416 4.416 7 C 0.432 3.568 8 N -0.860 5.860 9 N -0.560 5.560 10 C 0.425 3.575 11 C -0.407 4.407 12 H 0.092 0.908 13 C 0.069 3.931 14 N -0.715 5.715 15 Si 0.913 3.087 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.607 5.607 20 H 0.041 0.959 21 H 0.030 0.970 22 H 0.112 0.888 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.395 0.605 31 H 0.392 0.608 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 4.739 -0.440 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.101 4.101 3 C -0.202 4.202 4 C -0.093 4.093 5 C 0.057 3.943 6 C -0.447 4.447 7 C 0.183 3.817 8 N -0.405 5.405 9 N -0.288 5.288 10 C 0.186 3.814 11 C -0.443 4.443 12 H 0.110 0.890 13 C -0.157 4.157 14 N -0.337 5.337 15 Si 0.737 3.263 16 H -0.182 1.182 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.330 5.330 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.130 0.870 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.223 0.777 31 H 0.219 0.781 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.928 4.307 -0.569 5.239 hybrid contribution 0.659 -0.403 0.090 0.778 sum 3.587 3.904 -0.479 5.324 Atomic orbital electron populations 1.22200 0.94176 1.06355 0.98947 1.20907 0.97401 0.94232 0.97583 1.21874 1.00168 0.96990 1.01182 1.20441 0.99291 0.91318 0.98266 1.20717 0.89677 0.94004 0.89900 1.21137 0.99195 0.93108 1.31296 1.18744 0.89627 0.86131 0.87198 1.41963 1.07291 1.07112 1.84103 1.68959 0.97905 1.35614 1.26294 1.19687 0.93345 0.81738 0.86633 1.19317 0.90579 0.92368 1.42021 0.89026 1.26059 0.99641 0.96342 0.93667 1.70174 1.34309 1.00233 1.28983 0.86180 0.82135 0.79496 0.78462 1.18203 1.19906 1.19914 1.68334 1.16733 1.20863 1.27054 0.93993 0.95098 0.87025 0.92069 0.93395 0.93228 0.93029 0.91241 0.91936 0.88551 0.77705 0.78116 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.83 37.16 0.33 -2.62 16 2 C -0.08 -1.41 2.91 -90.62 -0.26 -1.67 16 3 C -0.14 -1.96 9.19 37.16 0.34 -1.62 16 4 C -0.05 -1.01 5.15 -27.88 -0.14 -1.15 16 5 C 0.21 4.85 6.20 -82.34 -0.51 4.33 16 6 C -0.42 -9.59 9.69 -38.74 -0.38 -9.96 16 7 C 0.43 10.59 7.82 -154.99 -1.21 9.38 16 8 N -0.86 -16.63 9.06 31.25 0.28 -16.34 16 9 N -0.56 -15.66 7.91 -11.88 -0.09 -15.75 16 10 C 0.43 12.09 7.37 -158.34 -1.17 10.92 16 11 C -0.41 -11.24 9.37 -37.63 -0.35 -11.59 16 12 H 0.09 2.43 7.85 -52.49 -0.41 2.02 16 13 C 0.07 1.77 5.50 -17.35 -0.10 1.67 16 14 N -0.71 -18.98 11.42 55.55 0.63 -18.34 16 15 Si 0.91 18.84 29.56 -169.99 -5.02 13.82 16 16 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 N -0.61 -15.82 7.09 -8.96 -0.06 -15.88 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.11 2.49 5.21 -51.93 -0.27 2.22 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.02 7.93 -51.93 -0.41 0.61 16 29 H 0.10 1.94 8.00 -52.48 -0.42 1.52 16 30 H 0.39 7.44 8.95 -40.82 -0.37 7.07 16 31 H 0.39 6.09 8.84 -40.82 -0.36 5.73 16 32 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -30.10 270.46 -7.97 -38.07 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -4.33 Total: 12.66 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.45 Total: -2.30 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.76 Total: -66.31 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.10 -7.97 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259847787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.698 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds