Wall clock time and date at job start Mon Mar 30 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47051 * 2 1 4 4 N 1.40074 * 126.02582 * 269.95814 * 3 2 1 5 5 C 1.30831 * 108.21131 * 180.02562 * 4 3 2 6 6 C 1.39873 * 108.23162 * 359.97438 * 5 4 3 7 7 C 1.34900 * 126.02545 * 90.00011 * 3 2 1 8 8 C 1.51154 * 143.51649 * 359.97438 * 7 3 2 9 9 N 1.48333 * 105.56604 * 197.32747 * 8 7 3 10 10 C 1.46896 * 111.04643 * 91.96627 * 9 8 7 11 11 C 1.50706 * 109.47180 * 61.63676 * 10 9 8 12 12 H 1.07998 * 119.99582 * 5.23148 * 11 10 9 13 13 C 1.37878 * 120.00083 * 185.23317 * 11 10 9 14 14 N 1.31515 * 119.99879 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99934 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46903 * 90.00117 * 15 13 11 17 17 H 1.48503 * 109.46760 * 210.00057 * 15 13 11 18 18 H 1.48503 * 109.47234 * 330.00094 * 15 13 11 19 19 C 1.48115 * 103.31522 * 332.91372 * 9 8 7 20 20 H 1.08995 * 109.47537 * 299.99872 * 1 2 3 21 21 H 1.09000 * 109.47087 * 60.00347 * 1 2 3 22 22 H 1.09008 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47422 * 240.00281 * 2 1 3 24 24 H 1.09000 * 109.47087 * 119.99652 * 2 1 3 25 25 H 1.07995 * 125.88881 * 180.02562 * 5 4 3 26 26 H 1.08996 * 110.22972 * 316.30851 * 8 7 3 27 27 H 1.08992 * 110.23027 * 78.18353 * 8 7 3 28 28 H 1.08997 * 109.47687 * 181.63945 * 10 9 8 29 29 H 1.09000 * 109.47031 * 301.63943 * 10 9 8 30 30 H 0.97002 * 119.99456 * 179.97438 * 14 13 11 31 31 H 1.09004 * 110.22421 * 268.02549 * 19 9 8 32 32 H 1.08995 * 110.23084 * 146.15549 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2937 2.1577 -1.1329 5 6 2.7091 3.3320 -0.7326 6 6 2.7113 3.3420 0.6661 7 6 2.2827 2.1293 1.0910 8 6 2.2783 2.1181 2.6025 9 7 2.3311 3.5430 3.0113 10 6 0.9801 4.0885 3.1983 11 6 0.2802 3.3311 4.2973 12 1 0.8153 2.5827 4.8628 13 6 -1.0434 3.5937 4.5807 14 7 -1.6540 2.9331 5.5401 15 14 -1.9688 4.8888 3.6029 16 1 -2.6055 4.2550 2.4205 17 1 -3.0155 5.5017 4.4598 18 1 -1.0211 5.9391 3.1513 19 6 3.0157 4.1992 1.8735 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.9994 4.1525 -1.3719 26 1 1.3645 1.6539 2.9733 27 1 3.1510 1.5838 2.9780 28 1 1.0479 5.1421 3.4694 29 1 0.4159 3.9875 2.2712 30 1 -2.5851 3.1181 5.7396 31 1 4.0907 4.2347 2.0503 32 1 2.6246 5.2061 1.7284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850100.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:31 Heat of formation + Delta-G solvation = 103.010448 kcal Electronic energy + Delta-G solvation = -15187.396249 eV Core-core repulsion = 12764.521097 eV Total energy + Delta-G solvation = -2422.875152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35105 -37.31836 -34.23763 -32.73168 -30.22787 -29.61967 -27.19475 -26.95907 -23.55126 -23.09325 -20.48130 -19.97288 -19.29239 -16.92032 -16.30702 -15.36325 -14.73734 -14.47450 -14.11397 -13.83277 -13.53020 -13.03664 -12.53596 -12.40017 -12.14788 -11.99650 -11.50667 -11.38509 -11.28610 -10.99548 -10.92175 -10.59399 -10.39296 -9.87768 -9.33640 -8.96672 -8.66096 -7.95379 -7.78749 -6.12795 -4.10958 2.14846 2.60570 3.07982 3.24998 3.33001 3.36718 4.37039 4.58684 4.65663 4.93953 5.07285 5.19711 5.20986 5.27197 5.31430 5.65601 5.73946 5.95730 6.05118 6.12025 6.17078 6.20013 6.34962 6.59952 6.72314 6.88512 6.95097 7.31452 7.39531 7.74106 7.76012 7.99973 8.53420 8.93743 9.49098 10.99730 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.009840 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.358827 B = 2844.958916 C = 3190.376648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.350 5.350 4 N -0.305 5.305 5 C 0.071 3.929 6 C -0.296 4.296 7 C 0.048 3.952 8 C 0.113 3.887 9 N -0.480 5.480 10 C 0.148 3.852 11 C -0.517 4.517 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.874 3.126 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.110 3.890 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.178 0.822 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.035 0.965 29 H -0.010 1.010 30 H 0.264 0.736 31 H 0.081 0.919 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -3.039 -10.254 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 N -0.132 5.132 4 N -0.126 5.126 5 C -0.114 4.114 6 C -0.309 4.309 7 C -0.083 4.083 8 C -0.018 4.018 9 N -0.201 5.201 10 C 0.021 3.979 11 C -0.555 4.555 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.701 3.299 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.019 4.019 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.195 0.805 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.053 0.947 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.370 -3.842 -10.620 12.967 hybrid contribution -1.028 1.079 -0.738 1.663 sum 5.342 -2.763 -11.358 12.852 Atomic orbital electron populations 1.22198 0.94253 1.02911 1.03692 1.21659 0.95436 0.78071 1.03911 1.47943 1.51268 1.11678 1.02286 1.77334 1.23653 1.03963 1.07666 1.23061 0.99462 0.95558 0.93310 1.21722 1.15322 0.99016 0.94791 1.22981 0.98175 0.92573 0.94566 1.21541 1.04008 0.93794 0.82459 1.65558 1.20343 1.00447 1.33761 1.20443 0.84813 0.96602 0.96030 1.20997 0.95605 1.22176 1.16695 0.89949 1.24873 0.97361 0.95818 0.94947 1.69888 1.11757 1.41427 1.30458 0.86879 0.80079 0.82765 0.80188 1.20443 1.21037 1.19049 1.21096 0.99429 0.96501 0.84904 0.91178 0.91992 0.90629 0.89201 0.88921 0.80499 0.87861 0.89152 0.94718 0.99175 0.92565 0.90129 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.15 0.38 -1.86 16 2 C 0.13 1.69 7.16 -4.04 -0.03 1.67 16 3 N -0.35 -5.96 3.61 -56.96 -0.21 -6.16 16 4 N -0.31 -5.36 12.57 30.62 0.39 -4.98 16 5 C 0.07 1.18 12.02 -17.37 -0.21 0.97 16 6 C -0.30 -5.34 6.93 -104.77 -0.73 -6.07 16 7 C 0.05 0.88 7.64 -82.01 -0.63 0.25 16 8 C 0.11 2.14 6.33 -3.96 -0.03 2.12 16 9 N -0.48 -10.02 5.60 -236.08 -1.32 -11.34 16 10 C 0.15 3.57 3.51 -4.98 -0.02 3.55 16 11 C -0.52 -14.27 8.51 -34.44 -0.29 -14.56 16 12 H 0.08 2.44 7.70 -52.49 -0.40 2.03 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 15 Si 0.87 21.51 27.37 -169.99 -4.65 16.86 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.35 6.70 56.52 0.38 -5.97 16 19 C 0.11 1.96 6.65 -4.08 -0.03 1.93 16 20 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 23 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 26 H 0.10 2.17 6.53 -51.93 -0.34 1.83 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.03 0.85 7.56 -51.93 -0.39 0.46 16 29 H -0.01 -0.24 7.21 -51.93 -0.37 -0.62 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 LS Contribution 268.64 15.07 4.05 4.05 Total: -1.00 -31.53 268.64 -7.10 -38.63 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.46 Total: -0.97 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.67 Total: -10.04 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.37 Total: -48.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.65 Total: 16.86 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.53 -7.10 -38.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850100.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.637 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds