Wall clock time and date at job start Mon Mar 30 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47051 * 2 1 4 4 N 1.40074 * 126.02582 * 269.95814 * 3 2 1 5 5 C 1.30831 * 108.21131 * 180.02562 * 4 3 2 6 6 C 1.39873 * 108.23162 * 359.97438 * 5 4 3 7 7 C 1.34900 * 126.02545 * 90.00011 * 3 2 1 8 8 C 1.51154 * 143.51649 * 359.97438 * 7 3 2 9 9 N 1.48333 * 105.56604 * 197.32747 * 8 7 3 10 10 C 1.46896 * 111.04643 * 91.96627 * 9 8 7 11 11 C 1.50706 * 109.47180 * 61.63676 * 10 9 8 12 12 H 1.07998 * 119.99582 * 5.23148 * 11 10 9 13 13 C 1.37878 * 120.00083 * 185.23317 * 11 10 9 14 14 N 1.31515 * 119.99879 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99934 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46903 * 90.00117 * 15 13 11 17 17 H 1.48503 * 109.46760 * 210.00057 * 15 13 11 18 18 H 1.48503 * 109.47234 * 330.00094 * 15 13 11 19 19 C 1.48115 * 103.31522 * 332.91372 * 9 8 7 20 20 H 1.08995 * 109.47537 * 299.99872 * 1 2 3 21 21 H 1.09000 * 109.47087 * 60.00347 * 1 2 3 22 22 H 1.09008 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47422 * 240.00281 * 2 1 3 24 24 H 1.09000 * 109.47087 * 119.99652 * 2 1 3 25 25 H 1.07995 * 125.88881 * 180.02562 * 5 4 3 26 26 H 1.08996 * 110.22972 * 316.30851 * 8 7 3 27 27 H 1.08992 * 110.23027 * 78.18353 * 8 7 3 28 28 H 1.08997 * 109.47687 * 181.63945 * 10 9 8 29 29 H 1.09000 * 109.47031 * 301.63943 * 10 9 8 30 30 H 0.97002 * 119.99456 * 179.97438 * 14 13 11 31 31 H 1.09004 * 110.22421 * 268.02549 * 19 9 8 32 32 H 1.08995 * 110.23084 * 146.15549 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2937 2.1577 -1.1329 5 6 2.7091 3.3320 -0.7326 6 6 2.7113 3.3420 0.6661 7 6 2.2827 2.1293 1.0910 8 6 2.2783 2.1181 2.6025 9 7 2.3311 3.5430 3.0113 10 6 0.9801 4.0885 3.1983 11 6 0.2802 3.3311 4.2973 12 1 0.8153 2.5827 4.8628 13 6 -1.0434 3.5937 4.5807 14 7 -1.6540 2.9331 5.5401 15 14 -1.9688 4.8888 3.6029 16 1 -2.6055 4.2550 2.4205 17 1 -3.0155 5.5017 4.4598 18 1 -1.0211 5.9391 3.1513 19 6 3.0157 4.1992 1.8735 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.9994 4.1525 -1.3719 26 1 1.3645 1.6539 2.9733 27 1 3.1510 1.5838 2.9780 28 1 1.0479 5.1421 3.4694 29 1 0.4159 3.9875 2.2712 30 1 -2.5851 3.1181 5.7396 31 1 4.0907 4.2347 2.0503 32 1 2.6246 5.2061 1.7284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850100.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:31 Heat of formation + Delta-G solvation = 80.544642 kcal Electronic energy + Delta-G solvation = -15188.370440 eV Core-core repulsion = 12764.521097 eV Total energy + Delta-G solvation = -2423.849342 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.69538 -38.85263 -35.43037 -34.80419 -31.91249 -30.92755 -28.74193 -28.58277 -24.99521 -24.55029 -22.17172 -21.30688 -20.67628 -18.92541 -17.69149 -16.94760 -16.38565 -15.81457 -15.58639 -15.37921 -14.96571 -14.54117 -14.44554 -13.90652 -13.41273 -13.14784 -13.10456 -12.86023 -12.79030 -12.67264 -12.34708 -12.18126 -11.91032 -11.85367 -11.45146 -10.83433 -10.26346 -9.53907 -9.21961 -8.31900 -6.34541 0.80586 1.30217 1.32676 1.38693 1.43108 1.76797 2.30468 3.01923 3.17937 3.30822 3.70746 3.88441 4.02635 4.11070 4.28085 4.44752 4.49827 4.63784 4.67812 4.76145 4.84545 4.87230 4.91473 5.07413 5.10414 5.24571 5.44810 5.68607 5.86943 5.95600 6.06070 6.48186 6.68486 6.71274 7.28975 8.83806 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.009840 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.358827 B = 2844.958916 C = 3190.376648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 N -0.353 5.353 4 N -0.318 5.318 5 C 0.073 3.927 6 C -0.307 4.307 7 C 0.029 3.971 8 C 0.119 3.881 9 N -0.493 5.493 10 C 0.162 3.838 11 C -0.518 4.518 12 H 0.049 0.951 13 C 0.018 3.982 14 N -0.940 5.940 15 Si 0.936 3.064 16 H -0.277 1.277 17 H -0.278 1.278 18 H -0.250 1.250 19 C 0.113 3.887 20 H 0.036 0.964 21 H 0.052 0.948 22 H 0.107 0.893 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.213 0.787 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.036 0.964 29 H -0.019 1.019 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 -2.383 -12.044 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 N -0.135 5.135 4 N -0.140 5.140 5 C -0.112 4.112 6 C -0.319 4.319 7 C -0.102 4.102 8 C -0.012 4.012 9 N -0.214 5.214 10 C 0.035 3.965 11 C -0.556 4.556 12 H 0.067 0.933 13 C -0.181 4.181 14 N -0.580 5.580 15 Si 0.760 3.240 16 H -0.203 1.203 17 H -0.203 1.203 18 H -0.174 1.174 19 C -0.016 4.016 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.125 0.875 23 H 0.132 0.868 24 H 0.126 0.874 25 H 0.230 0.770 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.054 0.946 29 H -0.001 1.001 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.080 -3.197 -12.422 14.651 hybrid contribution -1.180 0.776 -0.169 1.423 sum 5.900 -2.421 -12.591 14.114 Atomic orbital electron populations 1.22146 0.94419 1.04326 1.01436 1.22011 0.95263 0.76727 1.05882 1.48288 1.50862 1.12700 1.01655 1.77307 1.23983 1.04582 1.08093 1.23604 0.98443 0.96071 0.93060 1.21916 1.15625 0.98761 0.95618 1.22878 0.99390 0.93593 0.94340 1.21391 1.03531 0.92816 0.83414 1.65516 1.18330 1.01593 1.35990 1.20154 0.86274 0.96082 0.94025 1.21189 0.95811 1.21521 1.17052 0.93305 1.25684 0.98394 0.98020 0.95959 1.70017 1.12312 1.43357 1.32333 0.85878 0.79010 0.80413 0.78664 1.20285 1.20295 1.17399 1.21167 1.00369 0.96348 0.83724 0.94506 0.92926 0.87455 0.86827 0.87370 0.77020 0.90774 0.87044 0.94573 1.00127 0.92346 0.87664 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 10.24 71.98 0.74 -3.40 16 2 C 0.12 2.95 7.16 86.38 0.62 3.56 16 3 N -0.35 -11.49 3.61 -334.11 -1.21 -12.70 16 4 N -0.32 -10.49 12.57 -57.03 -0.72 -11.21 16 5 C 0.07 2.21 12.02 85.24 1.02 3.24 16 6 C -0.31 -10.42 6.93 -19.96 -0.14 -10.55 16 7 C 0.03 1.05 7.64 41.59 0.32 1.37 16 8 C 0.12 4.51 6.33 85.42 0.54 5.05 16 9 N -0.49 -20.21 5.60 -900.83 -5.04 -25.25 16 10 C 0.16 7.77 3.51 85.56 0.30 8.07 16 11 C -0.52 -29.16 8.51 25.60 0.22 -28.94 16 12 H 0.05 3.01 7.70 -2.91 -0.02 2.99 16 13 C 0.02 1.02 5.47 84.65 0.46 1.49 16 14 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 15 Si 0.94 44.21 27.37 68.60 1.88 46.08 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.25 -11.11 6.70 99.48 0.67 -10.44 16 19 C 0.11 3.76 6.65 85.47 0.57 4.32 16 20 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 22 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.21 4.60 8.06 -2.91 -0.02 4.58 16 26 H 0.07 3.23 6.53 -2.39 -0.02 3.21 16 27 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 28 H 0.04 1.72 7.56 -2.39 -0.02 1.70 16 29 H -0.02 -0.95 7.21 -2.39 -0.02 -0.96 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.07 2.37 7.80 -2.39 -0.02 2.35 16 Total: -1.00 -67.72 268.64 0.92 -66.80 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.06 Total: 9.20 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.65 Total: -15.80 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -6.66 Total: -106.29 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.08 kcal Total: -67.72 0.92 -66.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850100.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.347 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds