Wall clock time and date at job start Mon Mar 30 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50694 * 109.47524 * 120.00267 * 2 1 3 5 5 H 1.08007 * 119.99693 * 119.99944 * 4 2 1 6 6 C 1.37870 * 120.00128 * 300.00059 * 4 2 1 7 7 N 1.31515 * 120.00141 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00205 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46872 * 59.99943 * 8 6 4 10 10 H 1.48500 * 109.47096 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47212 * 299.99979 * 8 6 4 12 12 C 1.50701 * 109.46917 * 240.00457 * 2 1 3 13 13 N 1.34056 * 126.89135 * 299.97249 * 12 2 1 14 14 N 1.28857 * 108.94947 * 179.97438 * 13 12 2 15 15 N 1.28314 * 110.13215 * 359.95570 * 14 13 12 16 16 C 1.34483 * 126.89104 * 119.96716 * 12 2 1 17 17 C 1.50595 * 128.61535 * 0.10840 * 16 12 2 18 18 C 1.53507 * 108.12609 * 164.43510 * 17 16 12 19 19 C 1.53141 * 109.14880 * 48.26375 * 18 17 16 20 20 C 1.46664 * 127.82862 * 180.34601 * 15 14 13 21 21 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47028 * 299.99180 * 1 2 3 23 23 H 1.08995 * 109.47554 * 59.99563 * 1 2 3 24 24 H 0.97002 * 120.00240 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.73086 * 284.08779 * 17 16 12 26 26 H 1.08995 * 109.73674 * 44.77587 * 17 16 12 27 27 H 1.08998 * 109.52321 * 168.17172 * 18 17 16 28 28 H 1.09000 * 109.51959 * 288.36199 * 18 17 16 29 29 H 1.09003 * 109.43762 * 50.60230 * 19 18 17 30 30 H 1.09007 * 109.43978 * 170.51669 * 19 18 17 31 31 H 1.09006 * 109.58360 * 282.28304 * 20 15 14 32 32 H 1.09000 * 109.58251 * 42.68836 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9437 0.8300 2.6034 8 14 2.3228 -1.1197 4.0078 9 1 3.8078 -1.1190 4.0074 10 1 1.8282 -0.4194 5.2203 11 1 1.8284 -2.5199 4.0080 12 6 2.0323 -0.7103 -1.2305 13 7 1.7955 -1.9833 -1.5779 14 7 2.3906 -2.2301 -2.6939 15 7 3.0098 -1.1841 -3.1050 16 6 2.8079 -0.1943 -2.2005 17 6 3.3707 1.1980 -2.3128 18 6 4.4867 1.1783 -3.3667 19 6 3.9804 0.4608 -4.6213 20 6 3.8031 -1.0314 -4.3291 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.7097 1.1616 3.4845 25 1 2.5857 1.8884 -2.6211 26 1 3.7783 1.5089 -1.3510 27 1 4.7669 2.2008 -3.6197 28 1 5.3534 0.6499 -2.9695 29 1 3.0218 0.8852 -4.9199 30 1 4.7013 0.5895 -5.4287 31 1 4.7810 -1.4927 -4.1907 32 1 3.2861 -1.5090 -5.1614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259947061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:03 Heat of formation + Delta-G solvation = 78.588079 kcal Electronic energy + Delta-G solvation = -15228.425171 eV Core-core repulsion = 12804.490985 eV Total energy + Delta-G solvation = -2423.934185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.62948 -36.88961 -34.77088 -32.59397 -30.71214 -30.27989 -27.78335 -25.02870 -24.26602 -22.58707 -22.36923 -19.56733 -19.12842 -16.60836 -16.01911 -15.67544 -14.71165 -14.53915 -14.13383 -14.04476 -13.42773 -13.09458 -12.54706 -12.05790 -11.50358 -11.42343 -11.13761 -11.08728 -10.82644 -10.78168 -10.67050 -10.44979 -10.13589 -9.86754 -9.54151 -9.19647 -8.89872 -8.29635 -7.94673 -5.93236 -3.97373 2.30890 2.89896 3.39077 3.42208 3.45543 3.57187 4.38804 4.52360 4.57787 4.70609 4.95644 5.16361 5.29681 5.37568 5.47678 5.55114 5.62758 5.77828 5.87892 6.12634 6.17678 6.28407 6.54224 6.94789 7.03194 7.28380 7.32985 7.38975 7.76289 7.98492 8.16626 8.47459 9.03324 9.40018 9.65817 11.12981 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.008104 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.792756 B = 3454.062147 C = 3570.885234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.119 3.881 3 H 0.042 0.958 4 C -0.497 4.497 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.044 3.956 13 N -0.263 5.263 14 N -0.112 5.112 15 N -0.301 5.301 16 C -0.051 4.051 17 C -0.041 4.041 18 C -0.125 4.125 19 C -0.135 4.135 20 C 0.120 3.880 21 H 0.034 0.966 22 H 0.087 0.913 23 H 0.004 0.996 24 H 0.261 0.739 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 3.100 -13.113 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.098 3.902 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.094 4.094 13 N -0.130 5.130 14 N -0.090 5.090 15 N -0.099 5.099 16 C -0.180 4.180 17 C -0.080 4.080 18 C -0.163 4.163 19 C -0.173 4.173 20 C -0.002 4.002 21 H 0.053 0.947 22 H 0.106 0.894 23 H 0.023 0.977 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.289 1.687 -13.299 14.808 hybrid contribution 0.688 0.461 0.870 1.201 sum 6.977 2.148 -12.429 14.414 Atomic orbital electron populations 1.21723 0.97289 0.99870 0.99893 1.17280 0.92921 0.94067 0.85887 0.93973 1.20991 1.30846 1.12068 0.89680 0.92622 1.24903 0.95168 0.95054 0.98798 1.69866 1.37005 1.23014 1.23446 0.86623 0.79062 0.79969 0.82169 1.20432 1.21307 1.20192 1.22529 0.97833 0.90875 0.98114 1.75202 1.17883 1.15541 1.04348 1.78089 1.10133 1.10679 1.10111 1.47127 1.35884 1.08811 1.18030 1.21671 1.07979 0.94293 0.94080 1.20161 0.97192 0.90048 1.00618 1.21699 0.98601 1.01247 0.94774 1.21903 1.03125 0.93000 0.99254 1.21955 0.95461 0.98628 0.84113 0.94687 0.89444 0.97672 0.92954 0.90053 0.88675 0.90386 0.91324 0.90591 0.89255 0.89299 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.95 37.16 0.33 -2.99 16 2 C 0.12 3.10 2.70 -92.93 -0.25 2.84 16 3 H 0.04 1.11 7.59 -51.93 -0.39 0.71 16 4 C -0.50 -14.24 8.55 -34.45 -0.29 -14.54 16 5 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.04 1.04 5.69 -82.95 -0.47 0.57 16 13 N -0.26 -6.58 12.42 33.18 0.41 -6.17 16 14 N -0.11 -2.45 13.23 60.35 0.80 -1.65 16 15 N -0.30 -5.44 3.77 -57.07 -0.21 -5.65 16 16 C -0.05 -0.99 6.61 -82.31 -0.54 -1.53 16 17 C -0.04 -0.61 5.80 -27.67 -0.16 -0.77 16 18 C -0.13 -1.32 5.98 -26.40 -0.16 -1.48 16 19 C -0.13 -1.23 5.90 -26.62 -0.16 -1.38 16 20 C 0.12 1.39 7.22 -3.91 -0.03 1.37 16 21 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 23 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.09 1.49 8.06 -51.93 -0.42 1.07 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 265.31 15.07 4.00 4.00 Total: -1.00 -32.67 265.31 -5.70 -38.37 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -4.47 Total: -4.64 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.83 Total: -16.28 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 1.62 Total: -38.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.67 -5.70 -38.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.957 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds