Wall clock time and date at job start Mon Mar 30 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50694 * 109.47524 * 120.00267 * 2 1 3 5 5 H 1.08007 * 119.99693 * 119.99944 * 4 2 1 6 6 C 1.37870 * 120.00128 * 300.00059 * 4 2 1 7 7 N 1.31515 * 120.00141 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00205 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46872 * 59.99943 * 8 6 4 10 10 H 1.48500 * 109.47096 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47212 * 299.99979 * 8 6 4 12 12 C 1.50701 * 109.46917 * 240.00457 * 2 1 3 13 13 N 1.34056 * 126.89135 * 299.97249 * 12 2 1 14 14 N 1.28857 * 108.94947 * 179.97438 * 13 12 2 15 15 N 1.28314 * 110.13215 * 359.95570 * 14 13 12 16 16 C 1.34483 * 126.89104 * 119.96716 * 12 2 1 17 17 C 1.50595 * 128.61535 * 0.10840 * 16 12 2 18 18 C 1.53507 * 108.12609 * 164.43510 * 17 16 12 19 19 C 1.53141 * 109.14880 * 48.26375 * 18 17 16 20 20 C 1.46664 * 127.82862 * 180.34601 * 15 14 13 21 21 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47028 * 299.99180 * 1 2 3 23 23 H 1.08995 * 109.47554 * 59.99563 * 1 2 3 24 24 H 0.97002 * 120.00240 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.73086 * 284.08779 * 17 16 12 26 26 H 1.08995 * 109.73674 * 44.77587 * 17 16 12 27 27 H 1.08998 * 109.52321 * 168.17172 * 18 17 16 28 28 H 1.09000 * 109.51959 * 288.36199 * 18 17 16 29 29 H 1.09003 * 109.43762 * 50.60230 * 19 18 17 30 30 H 1.09007 * 109.43978 * 170.51669 * 19 18 17 31 31 H 1.09006 * 109.58360 * 282.28304 * 20 15 14 32 32 H 1.09000 * 109.58251 * 42.68836 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9437 0.8300 2.6034 8 14 2.3228 -1.1197 4.0078 9 1 3.8078 -1.1190 4.0074 10 1 1.8282 -0.4194 5.2203 11 1 1.8284 -2.5199 4.0080 12 6 2.0323 -0.7103 -1.2305 13 7 1.7955 -1.9833 -1.5779 14 7 2.3906 -2.2301 -2.6939 15 7 3.0098 -1.1841 -3.1050 16 6 2.8079 -0.1943 -2.2005 17 6 3.3707 1.1980 -2.3128 18 6 4.4867 1.1783 -3.3667 19 6 3.9804 0.4608 -4.6213 20 6 3.8031 -1.0314 -4.3291 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.7097 1.1616 3.4845 25 1 2.5857 1.8884 -2.6211 26 1 3.7783 1.5089 -1.3510 27 1 4.7669 2.2008 -3.6197 28 1 5.3534 0.6499 -2.9695 29 1 3.0218 0.8852 -4.9199 30 1 4.7013 0.5895 -5.4287 31 1 4.7810 -1.4927 -4.1907 32 1 3.2861 -1.5090 -5.1614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259947061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:03 Heat of formation + Delta-G solvation = 56.858712 kcal Electronic energy + Delta-G solvation = -15229.367427 eV Core-core repulsion = 12804.490985 eV Total energy + Delta-G solvation = -2424.876441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.19178 -37.99220 -36.67327 -34.29027 -32.36769 -31.71146 -29.32254 -27.20913 -25.35312 -24.39151 -23.61719 -21.35675 -20.27578 -18.44956 -17.47096 -17.38457 -16.51838 -15.88587 -15.19644 -15.05911 -14.93940 -14.62478 -14.40721 -13.49566 -13.15983 -13.05078 -12.81797 -12.76706 -12.41260 -12.20347 -12.01299 -11.95483 -11.75703 -11.73135 -11.39256 -11.06415 -10.61499 -10.46186 -9.63276 -8.09201 -6.20741 0.77627 1.40455 1.43124 1.50511 1.65813 1.79096 2.45979 3.17874 3.45240 3.62340 3.78283 3.89449 4.15939 4.25336 4.37089 4.51573 4.59547 4.74854 4.86387 4.93442 4.97836 5.03164 5.11422 5.20678 5.23805 5.31318 5.46029 5.61163 5.88021 5.94693 6.02651 6.35929 6.81902 7.45019 7.74476 8.95688 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.008104 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.792756 B = 3454.062147 C = 3570.885234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.122 3.878 3 H 0.034 0.966 4 C -0.519 4.519 5 H 0.034 0.966 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.281 1.281 12 C 0.000 4.000 13 N -0.312 5.312 14 N -0.129 5.129 15 N -0.285 5.285 16 C -0.034 4.034 17 C -0.046 4.046 18 C -0.119 4.119 19 C -0.126 4.126 20 C 0.101 3.899 21 H 0.017 0.983 22 H 0.069 0.931 23 H 0.023 0.977 24 H 0.265 0.735 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.110 0.890 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.391 4.058 -14.832 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.558 4.558 5 H 0.052 0.948 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.207 1.207 12 C -0.138 4.138 13 N -0.177 5.177 14 N -0.107 5.107 15 N -0.083 5.083 16 C -0.166 4.166 17 C -0.086 4.086 18 C -0.157 4.157 19 C -0.164 4.164 20 C -0.018 4.018 21 H 0.036 0.964 22 H 0.088 0.912 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.153 0.847 31 H 0.128 0.872 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.987 2.636 -15.052 17.242 hybrid contribution 0.208 0.184 1.301 1.330 sum 8.195 2.820 -13.751 16.254 Atomic orbital electron populations 1.21552 0.97544 0.98601 0.99828 1.17053 0.92738 0.93563 0.86450 0.94782 1.21144 1.31306 1.11846 0.91476 0.94788 1.25576 0.95247 0.95729 1.01251 1.69950 1.37234 1.23664 1.24253 0.85723 0.78806 0.78599 0.79178 1.19742 1.19875 1.20656 1.22324 1.00850 0.91413 0.99226 1.75096 1.19953 1.16613 1.06086 1.77931 1.11054 1.12086 1.09581 1.47646 1.34407 1.07236 1.18968 1.22163 1.05604 0.96148 0.92664 1.20402 0.99092 0.87178 1.01888 1.21722 0.96530 1.03591 0.93831 1.21973 1.04421 0.90349 0.99665 1.22695 0.95701 1.01422 0.82002 0.96410 0.91223 0.95759 0.92596 0.88752 0.90022 0.87120 0.91453 0.90596 0.84736 0.87219 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 8.95 71.98 0.64 -5.56 16 2 C 0.12 6.59 2.70 -12.29 -0.03 6.55 16 3 H 0.03 1.85 7.59 -2.39 -0.02 1.83 16 4 C -0.52 -30.75 8.55 25.60 0.22 -30.53 16 5 H 0.03 2.10 7.74 -2.91 -0.02 2.08 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -52.77 11.32 21.44 0.24 -52.52 16 8 Si 0.95 45.56 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 12 C 0.00 0.00 5.69 41.36 0.24 0.24 16 13 N -0.31 -16.07 12.42 -48.94 -0.61 -16.68 16 14 N -0.13 -5.64 13.23 37.02 0.49 -5.15 16 15 N -0.29 -9.89 3.77 -334.48 -1.26 -11.15 16 16 C -0.03 -1.31 6.61 41.09 0.27 -1.04 16 17 C -0.05 -1.29 5.80 29.99 0.17 -1.12 16 18 C -0.12 -2.03 5.98 30.81 0.18 -1.84 16 19 C -0.13 -1.68 5.90 30.67 0.18 -1.50 16 20 C 0.10 1.97 7.22 86.37 0.62 2.59 16 21 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 23 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.08 2.51 8.06 -2.39 -0.02 2.49 16 27 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 30 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.84 265.31 4.94 -68.90 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: 1.10 Total: -0.42 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 2.95 Total: -30.56 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.13 Total: -85.51 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.84 4.94 -68.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.755 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds