Wall clock time and date at job start Mon Mar 30 2020 03:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99770 * 2 1 4 4 N 1.46502 * 109.47195 * 124.99952 * 3 2 1 5 5 N 1.40078 * 126.03798 * 269.97669 * 4 3 2 6 6 C 1.30835 * 108.20739 * 180.02562 * 5 4 3 7 7 C 1.39870 * 108.20234 * 359.78375 * 6 5 4 8 8 C 1.34950 * 126.03577 * 89.99686 * 4 3 2 9 9 C 1.50701 * 126.12642 * 359.94326 * 8 4 3 10 10 H 1.09003 * 109.46844 * 25.00327 * 9 8 4 11 11 C 1.50694 * 109.47340 * 264.99811 * 9 8 4 12 12 H 1.07997 * 120.00320 * 324.48074 * 11 9 8 13 13 C 1.37881 * 119.99713 * 144.48061 * 11 9 8 14 14 N 1.31517 * 119.99490 * 172.31518 * 13 11 9 15 15 Si 1.86799 * 120.00097 * 352.03382 * 13 11 9 16 16 H 1.48502 * 109.46709 * 84.73866 * 15 13 11 17 17 H 1.48494 * 109.47233 * 204.73497 * 15 13 11 18 18 H 1.48500 * 109.47279 * 324.74292 * 15 13 11 19 19 C 1.53003 * 109.46653 * 144.99804 * 9 8 4 20 20 N 1.46908 * 109.46686 * 183.70521 * 19 9 8 21 21 H 1.07999 * 119.99769 * 180.02562 * 1 2 3 22 22 H 1.07999 * 120.00095 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00095 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47212 * 5.00069 * 3 2 1 25 25 H 1.09001 * 109.46846 * 245.00184 * 3 2 1 26 26 H 1.08000 * 125.90117 * 179.97438 * 6 5 4 27 27 H 1.07995 * 126.04398 * 180.23143 * 7 6 5 28 28 H 0.97004 * 119.99815 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.47298 * 303.70519 * 19 9 8 30 30 H 1.09002 * 109.47179 * 63.70787 * 19 9 8 31 31 H 1.00900 * 110.99374 * 173.73197 * 20 19 9 32 32 H 1.00893 * 111.00294 * 297.68226 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 7 2.7137 1.8115 2.4175 6 6 3.7889 1.6706 3.1495 7 6 4.7853 1.0932 2.3557 8 6 4.2721 0.8996 1.1187 9 6 4.9963 0.3024 -0.0603 10 1 4.5381 0.6547 -0.9845 11 6 4.9068 -1.2005 0.0038 12 1 4.9301 -1.7026 0.9597 13 6 4.7951 -1.9346 -1.1580 14 7 4.8690 -3.2470 -1.1161 15 14 4.5310 -1.0655 -2.7902 16 1 5.8426 -0.6440 -3.3444 17 1 3.8660 -1.9913 -3.7420 18 1 3.6745 0.1296 -2.5819 19 6 6.4655 0.7279 -0.0251 20 7 7.1512 0.2196 -1.2208 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0896 25 1 2.6213 1.4027 -0.9314 26 1 3.8888 1.9489 4.1882 27 1 5.7877 0.8472 2.6733 28 1 4.7901 -3.7635 -1.9333 29 1 6.5284 1.8159 -0.0050 30 1 6.9406 0.3200 0.8672 31 1 8.0954 0.5717 -1.2731 32 1 7.1397 -0.7890 -1.2429 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971719.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:44 Heat of formation + Delta-G solvation = 94.635219 kcal Electronic energy + Delta-G solvation = -15325.747946 eV Core-core repulsion = 12902.509617 eV Total energy + Delta-G solvation = -2423.238329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51416 -35.48423 -34.91213 -32.16521 -31.22499 -30.36714 -27.31914 -25.71690 -24.24830 -21.41955 -20.37723 -19.68325 -18.38291 -17.09219 -16.27708 -15.04560 -15.03306 -14.55124 -14.05887 -13.51452 -13.35999 -13.08321 -12.69868 -12.58118 -12.19308 -11.55545 -11.46577 -11.33708 -10.93613 -10.64657 -10.12377 -9.96201 -9.80226 -9.39280 -9.20594 -8.73118 -8.44623 -7.78623 -7.67532 -6.19580 -4.23433 2.35457 2.74446 3.30372 3.38457 3.40807 3.48976 3.62110 4.37960 5.08818 5.10387 5.20542 5.35583 5.51728 5.70157 5.77364 5.90710 6.10252 6.20283 6.22105 6.46685 6.59223 6.64642 6.71071 6.94716 6.96581 7.20384 7.39943 7.51428 7.78974 7.98103 8.28805 8.37600 8.47968 8.85611 9.40044 10.90885 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.013839 C = 0.010172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.501870 B = 2022.758094 C = 2752.097984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C 0.163 3.837 4 N -0.369 5.369 5 N -0.324 5.324 6 C 0.040 3.960 7 C -0.299 4.299 8 C 0.148 3.852 9 C 0.062 3.938 10 H 0.054 0.946 11 C -0.511 4.511 12 H 0.075 0.925 13 C 0.080 3.920 14 N -0.892 5.892 15 Si 0.883 3.117 16 H -0.250 1.250 17 H -0.302 1.302 18 H -0.274 1.274 19 C 0.080 3.920 20 N -0.850 5.850 21 H 0.100 0.900 22 H 0.094 0.906 23 H 0.129 0.871 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.172 0.828 27 H 0.137 0.863 28 H 0.266 0.734 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.324 0.676 32 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 7.766 0.890 7.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.177 4.177 3 C 0.042 3.958 4 N -0.150 5.150 5 N -0.145 5.145 6 C -0.145 4.145 7 C -0.328 4.328 8 C 0.020 3.980 9 C 0.041 3.959 10 H 0.072 0.928 11 C -0.549 4.549 12 H 0.093 0.907 13 C -0.123 4.123 14 N -0.528 5.528 15 Si 0.711 3.289 16 H -0.175 1.175 17 H -0.229 1.229 18 H -0.200 1.200 19 C -0.052 4.052 20 N -0.380 5.380 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.147 0.853 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.189 0.811 27 H 0.155 0.845 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.134 0.866 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.494 8.381 0.252 9.084 hybrid contribution 1.274 -0.569 -0.053 1.396 sum -2.220 7.813 0.199 8.125 Atomic orbital electron populations 1.23767 0.95551 1.01632 1.01417 1.23423 0.96224 0.99411 0.98676 1.20636 0.91712 0.96518 0.86933 1.48394 1.09277 1.48696 1.08647 1.77161 1.23643 1.23846 0.89818 1.23622 0.91487 0.99929 0.99484 1.21038 1.01996 1.16241 0.93545 1.21721 0.84762 0.92987 0.98550 1.18109 0.90932 0.96709 0.90195 0.92786 1.20719 1.51916 0.87132 0.95106 0.90719 1.25037 0.93752 0.94603 0.98934 1.69926 1.48829 1.05368 1.28717 0.86788 0.80028 0.78522 0.83518 1.17455 1.22919 1.19992 1.21778 0.96156 0.96520 0.90712 1.58771 1.20449 1.16448 1.42381 0.88189 0.88819 0.85348 0.89407 0.88380 0.81142 0.84543 0.92428 0.93747 0.95697 0.86567 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 29.01 0.42 -2.40 16 2 C -0.16 -2.91 9.85 -36.02 -0.35 -3.26 16 3 C 0.16 2.97 6.68 -5.19 -0.03 2.93 16 4 N -0.37 -7.64 3.60 -58.31 -0.21 -7.85 16 5 N -0.32 -6.59 12.57 30.62 0.39 -6.21 16 6 C 0.04 0.75 12.03 -17.37 -0.21 0.54 16 7 C -0.30 -5.96 9.99 -40.01 -0.40 -6.36 16 8 C 0.15 3.19 5.84 -82.26 -0.48 2.71 16 9 C 0.06 1.38 2.05 -92.92 -0.19 1.19 16 10 H 0.05 1.25 3.78 -51.93 -0.20 1.05 16 11 C -0.51 -13.27 8.23 -34.44 -0.28 -13.56 16 12 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 13 C 0.08 2.13 4.74 -17.82 -0.08 2.04 16 14 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 15 Si 0.88 20.69 25.40 -169.99 -4.32 16.37 16 16 H -0.25 -5.72 6.86 56.52 0.39 -5.33 16 17 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.27 -6.20 6.17 56.52 0.35 -5.85 16 19 C 0.08 1.60 5.74 -3.82 -0.02 1.57 16 20 N -0.85 -16.40 7.97 -10.36 -0.08 -16.49 16 21 H 0.10 1.39 8.06 -52.49 -0.42 0.97 16 22 H 0.09 1.22 7.84 -52.49 -0.41 0.81 16 23 H 0.13 2.75 8.06 -52.49 -0.42 2.33 16 24 H 0.09 1.37 7.79 -51.93 -0.40 0.97 16 25 H 0.10 1.78 6.73 -51.93 -0.35 1.43 16 26 H 0.17 2.45 8.06 -52.49 -0.42 2.02 16 27 H 0.14 2.52 7.48 -52.49 -0.39 2.13 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.02 0.49 7.47 -51.93 -0.39 0.11 16 31 H 0.32 5.14 9.08 -39.29 -0.36 4.78 16 32 H 0.35 7.51 7.00 -39.30 -0.28 7.23 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -29.42 268.96 -5.13 -34.55 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -4.09 Total: 14.83 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.64 Total: -14.59 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.87 Total: -55.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.32 Total: 16.37 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.42 -5.13 -34.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971719.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.184 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds