Wall clock time and date at job start Mon Mar 30 2020 03:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00111 * 2 1 4 4 N 1.46497 * 109.46738 * 124.99735 * 3 2 1 5 5 N 1.40086 * 126.03850 * 270.14792 * 4 3 2 6 6 C 1.30837 * 108.20334 * 180.23825 * 5 4 3 7 7 C 1.39873 * 108.20236 * 359.78250 * 6 5 4 8 8 C 1.34950 * 126.03496 * 90.00972 * 4 3 2 9 9 C 1.50699 * 126.12654 * 0.02624 * 8 4 3 10 10 H 1.09000 * 109.47247 * 334.71750 * 9 8 4 11 11 C 1.50697 * 109.46956 * 94.72033 * 9 8 4 12 12 H 1.07994 * 120.00496 * 359.97438 * 11 9 8 13 13 C 1.37878 * 119.99687 * 179.97438 * 11 9 8 14 14 N 1.31518 * 120.00216 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46954 * 60.00173 * 15 13 11 17 17 H 1.48503 * 109.47431 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47490 * 300.00258 * 15 13 11 19 19 C 1.53006 * 109.46866 * 214.71918 * 9 8 4 20 20 N 1.46897 * 109.47346 * 65.00265 * 19 9 8 21 21 H 1.07997 * 120.00175 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00171 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00171 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46954 * 4.99993 * 3 2 1 25 25 H 1.08993 * 109.47185 * 245.00091 * 3 2 1 26 26 H 1.08003 * 125.89714 * 179.82569 * 6 5 4 27 27 H 1.08004 * 126.03493 * 180.02562 * 7 6 5 28 28 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 29 29 H 1.09004 * 109.46579 * 184.99641 * 19 9 8 30 30 H 1.08992 * 109.47046 * 304.99824 * 19 9 8 31 31 H 1.00901 * 111.00121 * 56.03596 * 20 19 9 32 32 H 1.00899 * 111.00431 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 7 2.7125 1.8082 2.4185 6 6 3.7895 1.6724 3.1489 7 6 4.7881 1.1015 2.3531 8 6 4.2720 0.8995 1.1187 9 6 4.9968 0.3042 -0.0609 10 1 4.2739 -0.1391 -0.7456 11 6 5.7675 1.3849 -0.7744 12 1 5.7354 2.4011 -0.4105 13 6 6.5137 1.0761 -1.8919 14 7 6.5526 -0.1614 -2.3354 15 14 7.4685 2.4157 -2.7768 16 1 8.4530 3.0205 -1.8439 17 1 8.1829 1.8291 -3.9391 18 1 6.5283 3.4627 -3.2513 19 6 5.9651 -0.7752 0.4274 20 7 5.2044 -1.8852 1.0166 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6213 1.4026 -0.9313 26 1 3.8898 1.9521 4.1873 27 1 5.7933 0.8636 2.6684 28 1 7.0778 -0.3787 -3.1214 29 1 6.5526 -1.1435 -0.4137 30 1 6.6317 -0.3523 1.1788 31 1 4.5329 -2.2526 0.3592 32 1 5.8219 -2.6119 1.3465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:48 Heat of formation + Delta-G solvation = 90.953755 kcal Electronic energy + Delta-G solvation = -15158.877379 eV Core-core repulsion = 12735.479409 eV Total energy + Delta-G solvation = -2423.397969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29038 -35.24020 -34.90403 -32.26067 -31.03810 -29.94772 -27.06594 -25.60556 -23.93527 -21.59525 -20.25150 -19.70656 -18.33027 -16.59264 -16.17822 -15.04784 -14.70271 -14.41607 -14.11375 -13.44921 -13.17472 -12.95062 -12.61607 -12.15344 -12.03432 -11.43051 -11.35272 -11.04319 -11.02509 -10.80709 -10.13719 -9.94096 -9.67267 -9.50751 -9.27780 -8.59660 -8.28803 -7.62970 -7.42183 -6.18121 -4.27387 2.32053 2.93102 3.22973 3.27644 3.31827 3.55157 3.87561 4.31856 5.08036 5.12433 5.23562 5.50754 5.68358 5.80245 5.94010 5.97615 6.10454 6.35863 6.74202 6.74749 6.76554 6.88756 6.89437 7.05649 7.38907 7.60943 7.67406 7.79200 7.87917 8.10649 8.27437 8.34054 8.69048 8.76993 9.38494 10.84991 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.009809 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.727426 B = 2853.981185 C = 2988.879143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C 0.162 3.838 4 N -0.374 5.374 5 N -0.332 5.332 6 C 0.037 3.963 7 C -0.286 4.286 8 C 0.162 3.838 9 C 0.107 3.893 10 H 0.035 0.965 11 C -0.512 4.512 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.068 3.932 20 N -0.855 5.855 21 H 0.098 0.902 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.167 0.833 27 H 0.133 0.867 28 H 0.264 0.736 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.326 0.674 32 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 -0.992 2.919 6.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C 0.040 3.960 4 N -0.156 5.156 5 N -0.153 5.153 6 C -0.149 4.149 7 C -0.314 4.314 8 C 0.035 3.965 9 C 0.086 3.914 10 H 0.053 0.947 11 C -0.551 4.551 12 H 0.078 0.922 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.725 3.275 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.063 4.063 20 N -0.382 5.382 21 H 0.116 0.884 22 H 0.114 0.886 23 H 0.132 0.868 24 H 0.104 0.896 25 H 0.125 0.875 26 H 0.184 0.816 27 H 0.151 0.849 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.137 0.863 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.670 -0.123 3.177 7.389 hybrid contribution 1.862 -0.242 -1.202 2.230 sum -4.808 -0.365 1.975 5.211 Atomic orbital electron populations 1.23772 0.95590 1.01721 1.01096 1.23297 0.96159 0.98962 0.99142 1.20608 0.91815 0.95813 0.87730 1.48337 1.09511 1.49392 1.08332 1.77105 1.23908 1.24404 0.89899 1.23573 0.91753 1.00164 0.99364 1.20910 1.01303 1.15475 0.93751 1.21746 0.83701 0.93310 0.97769 1.17554 0.92986 0.93378 0.87458 0.94732 1.20962 1.29237 0.94288 1.10597 0.92199 1.24951 0.96262 0.95687 0.96736 1.69848 1.40980 1.17643 1.24279 0.86545 0.80126 0.81744 0.79037 1.19996 1.21173 1.20139 1.21974 0.96053 0.90797 0.97473 1.59009 1.21237 1.13297 1.44640 0.88371 0.88577 0.86779 0.89575 0.87508 0.81560 0.84934 0.92616 0.91247 0.93168 0.86345 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 14.32 29.01 0.42 -2.04 16 2 C -0.16 -2.52 9.85 -36.02 -0.35 -2.87 16 3 C 0.16 2.91 6.47 -5.19 -0.03 2.87 16 4 N -0.37 -7.93 3.60 -58.32 -0.21 -8.14 16 5 N -0.33 -7.05 12.58 30.63 0.39 -6.66 16 6 C 0.04 0.73 12.03 -17.36 -0.21 0.52 16 7 C -0.29 -6.16 9.96 -40.01 -0.40 -6.56 16 8 C 0.16 3.65 5.52 -82.26 -0.45 3.19 16 9 C 0.11 2.54 1.92 -92.92 -0.18 2.36 16 10 H 0.03 0.87 7.50 -51.93 -0.39 0.48 16 11 C -0.51 -13.33 8.55 -34.44 -0.29 -13.63 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 14 N -0.89 -23.48 11.29 55.43 0.63 -22.85 16 15 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.07 1.52 5.71 -3.82 -0.02 1.50 16 20 N -0.86 -16.44 9.34 -10.37 -0.10 -16.54 16 21 H 0.10 1.14 8.06 -52.49 -0.42 0.71 16 22 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 23 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 24 H 0.09 1.39 7.79 -51.93 -0.40 0.98 16 25 H 0.11 1.98 7.55 -51.93 -0.39 1.59 16 26 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 27 H 0.13 2.76 7.24 -52.48 -0.38 2.38 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.07 1.72 5.95 -51.93 -0.31 1.41 16 30 H 0.05 1.15 7.02 -51.93 -0.36 0.78 16 31 H 0.33 6.10 8.99 -39.29 -0.35 5.74 16 32 H 0.32 5.41 9.08 -39.29 -0.36 5.06 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -28.28 276.47 -5.94 -34.23 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -4.17 Total: 13.48 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.62 Total: -13.04 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.70 Total: -54.19 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.28 -5.94 -34.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.181 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds