Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00111 * 2 1 4 4 N 1.46497 * 109.46738 * 124.99735 * 3 2 1 5 5 N 1.40086 * 126.03850 * 270.14792 * 4 3 2 6 6 C 1.30837 * 108.20334 * 180.23825 * 5 4 3 7 7 C 1.39873 * 108.20236 * 359.78250 * 6 5 4 8 8 C 1.34950 * 126.03496 * 90.00972 * 4 3 2 9 9 C 1.50699 * 126.12654 * 0.02624 * 8 4 3 10 10 H 1.09000 * 109.47247 * 334.71750 * 9 8 4 11 11 C 1.50697 * 109.46956 * 94.72033 * 9 8 4 12 12 H 1.07994 * 120.00496 * 359.97438 * 11 9 8 13 13 C 1.37878 * 119.99687 * 179.97438 * 11 9 8 14 14 N 1.31518 * 120.00216 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46954 * 60.00173 * 15 13 11 17 17 H 1.48503 * 109.47431 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47490 * 300.00258 * 15 13 11 19 19 C 1.53006 * 109.46866 * 214.71918 * 9 8 4 20 20 N 1.46897 * 109.47346 * 65.00265 * 19 9 8 21 21 H 1.07997 * 120.00175 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00171 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00171 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46954 * 4.99993 * 3 2 1 25 25 H 1.08993 * 109.47185 * 245.00091 * 3 2 1 26 26 H 1.08003 * 125.89714 * 179.82569 * 6 5 4 27 27 H 1.08004 * 126.03493 * 180.02562 * 7 6 5 28 28 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 29 29 H 1.09004 * 109.46579 * 184.99641 * 19 9 8 30 30 H 1.08992 * 109.47046 * 304.99824 * 19 9 8 31 31 H 1.00901 * 111.00121 * 56.03596 * 20 19 9 32 32 H 1.00899 * 111.00431 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 7 2.7125 1.8082 2.4185 6 6 3.7895 1.6724 3.1489 7 6 4.7881 1.1015 2.3531 8 6 4.2720 0.8995 1.1187 9 6 4.9968 0.3042 -0.0609 10 1 4.2739 -0.1391 -0.7456 11 6 5.7675 1.3849 -0.7744 12 1 5.7354 2.4011 -0.4105 13 6 6.5137 1.0761 -1.8919 14 7 6.5526 -0.1614 -2.3354 15 14 7.4685 2.4157 -2.7768 16 1 8.4530 3.0205 -1.8439 17 1 8.1829 1.8291 -3.9391 18 1 6.5283 3.4627 -3.2513 19 6 5.9651 -0.7752 0.4274 20 7 5.2044 -1.8852 1.0166 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6213 1.4026 -0.9313 26 1 3.8898 1.9521 4.1873 27 1 5.7933 0.8636 2.6684 28 1 7.0778 -0.3787 -3.1214 29 1 6.5526 -1.1435 -0.4137 30 1 6.6317 -0.3523 1.1788 31 1 4.5329 -2.2526 0.3592 32 1 5.8219 -2.6119 1.3465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = 72.229913 kcal Electronic energy + Delta-G solvation = -15159.689305 eV Core-core repulsion = 12735.479409 eV Total energy + Delta-G solvation = -2424.209896 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91097 -37.05792 -36.21778 -34.15597 -32.53899 -31.60644 -28.87111 -27.02030 -25.84663 -23.35705 -21.70735 -21.10855 -19.96475 -18.54667 -17.83344 -16.63389 -16.32276 -16.06407 -15.62510 -15.16193 -14.71079 -14.45644 -14.08667 -13.92246 -13.80058 -13.24286 -12.88116 -12.80787 -12.59931 -12.24446 -11.96777 -11.76755 -11.46038 -11.33123 -10.58207 -10.47875 -9.89655 -9.31687 -9.10749 -8.15603 -6.32458 1.08808 1.30723 1.41741 1.43564 1.51077 2.07466 2.22319 2.43121 3.08878 3.80542 3.93552 4.03792 4.19069 4.29080 4.46545 4.58942 4.63794 4.95749 5.01708 5.06063 5.09856 5.31901 5.46777 5.60285 5.69049 5.80447 5.87286 6.04231 6.08369 6.43069 6.50529 6.67800 6.86982 7.07040 7.35949 8.84920 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.009809 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.727426 B = 2853.981185 C = 2988.879143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.189 4.189 3 C 0.158 3.842 4 N -0.379 5.379 5 N -0.343 5.343 6 C 0.042 3.958 7 C -0.298 4.298 8 C 0.142 3.858 9 C 0.115 3.885 10 H 0.013 0.987 11 C -0.529 4.529 12 H 0.045 0.955 13 C 0.028 3.972 14 N -0.907 5.907 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.274 1.274 19 C 0.082 3.918 20 N -0.847 5.847 21 H 0.121 0.879 22 H 0.114 0.886 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.207 0.793 27 H 0.135 0.865 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.330 0.670 32 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -0.702 3.489 7.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.209 4.209 3 C 0.038 3.962 4 N -0.161 5.161 5 N -0.164 5.164 6 C -0.143 4.143 7 C -0.327 4.327 8 C 0.014 3.986 9 C 0.095 3.905 10 H 0.031 0.969 11 C -0.568 4.568 12 H 0.063 0.937 13 C -0.172 4.172 14 N -0.545 5.545 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.199 1.199 19 C -0.049 4.049 20 N -0.375 5.375 21 H 0.139 0.861 22 H 0.132 0.868 23 H 0.117 0.883 24 H 0.122 0.878 25 H 0.107 0.893 26 H 0.224 0.776 27 H 0.152 0.848 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.552 0.152 3.745 8.431 hybrid contribution 2.048 -0.352 -1.358 2.483 sum -5.504 -0.200 2.387 6.002 Atomic orbital electron populations 1.24081 0.94467 1.03627 0.96473 1.23065 0.97066 0.97338 1.03392 1.20752 0.91618 0.97700 0.86153 1.48613 1.09499 1.48957 1.09001 1.77060 1.24651 1.24661 0.90048 1.24156 0.90459 0.98873 1.00844 1.21104 1.01891 1.15814 0.93846 1.21623 0.84708 0.94513 0.97745 1.17327 0.92498 0.93131 0.87577 0.96863 1.21110 1.30056 0.94216 1.11423 0.93713 1.25573 0.96902 0.97498 0.97234 1.69945 1.41284 1.18819 1.24456 0.85685 0.78898 0.79479 0.78092 1.19838 1.20472 1.19939 1.21648 0.95564 0.91382 0.96313 1.58892 1.21157 1.13281 1.44190 0.86108 0.86822 0.88342 0.87838 0.89330 0.77599 0.84761 0.92523 0.93615 0.93846 0.85866 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 14.32 67.78 0.97 -2.62 16 2 C -0.19 -5.97 9.85 25.65 0.25 -5.72 16 3 C 0.16 5.69 6.47 85.63 0.55 6.25 16 4 N -0.38 -16.00 3.60 -338.42 -1.22 -17.22 16 5 N -0.34 -14.08 12.58 -57.02 -0.72 -14.80 16 6 C 0.04 1.58 12.03 85.24 1.03 2.60 16 7 C -0.30 -12.66 9.96 21.99 0.22 -12.44 16 8 C 0.14 6.44 5.52 41.40 0.23 6.67 16 9 C 0.12 5.61 1.92 -12.29 -0.02 5.59 16 10 H 0.01 0.70 7.50 -2.39 -0.02 0.68 16 11 C -0.53 -28.16 8.55 25.60 0.22 -27.94 16 12 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 13 C 0.03 1.48 5.29 84.65 0.45 1.93 16 14 N -0.91 -48.44 11.29 21.45 0.24 -48.20 16 15 Si 0.95 41.87 29.54 68.60 2.03 43.89 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C 0.08 3.75 5.71 86.31 0.49 4.25 16 20 N -0.85 -32.43 9.34 -186.72 -1.74 -34.17 16 21 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 22 H 0.11 2.36 7.84 -2.91 -0.02 2.33 16 23 H 0.10 3.37 8.06 -2.91 -0.02 3.35 16 24 H 0.10 3.24 7.79 -2.39 -0.02 3.22 16 25 H 0.09 3.42 7.55 -2.39 -0.02 3.41 16 26 H 0.21 5.83 8.06 -2.91 -0.02 5.81 16 27 H 0.13 5.55 7.24 -2.91 -0.02 5.52 16 28 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 29 H 0.05 2.31 5.95 -2.39 -0.01 2.30 16 30 H 0.04 2.01 7.02 -2.39 -0.02 1.99 16 31 H 0.33 12.38 8.99 -89.69 -0.81 11.57 16 32 H 0.34 11.10 9.08 -89.69 -0.81 10.29 16 Total: -1.00 -59.88 276.47 2.48 -57.40 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.49 Total: 34.52 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 4.39 Total: -21.43 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -3.44 Total: -114.38 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -59.88 2.48 -57.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.629 kcal (2) G-P(sol) polarization free energy of solvation -59.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds