Wall clock time and date at job start Mon Mar 30 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37942 * 119.99722 * 2 1 4 4 N 1.32795 * 118.91389 * 0.02562 * 3 2 1 5 5 C 1.31770 * 121.00961 * 179.74681 * 4 3 2 6 6 C 1.41209 * 118.87116 * 0.47872 * 5 4 3 7 7 C 1.41257 * 120.96908 * 179.78487 * 6 5 4 8 8 H 1.08000 * 119.99397 * 209.28244 * 7 6 5 9 9 C 1.39875 * 120.00245 * 29.28926 * 7 6 5 10 10 N 1.30901 * 119.99812 * 196.30973 * 9 7 6 11 11 Si 1.86794 * 119.99972 * 16.30210 * 9 7 6 12 12 H 1.48507 * 109.47344 * 270.00483 * 11 9 7 13 13 H 1.48500 * 109.47083 * 30.00448 * 11 9 7 14 14 H 1.48497 * 109.47321 * 150.00658 * 11 9 7 15 15 C 1.41165 * 118.05619 * 359.51731 * 6 5 4 16 16 C 1.50707 * 120.56142 * 180.27115 * 15 6 5 17 17 C 1.53008 * 109.46846 * 119.99739 * 16 15 6 18 18 C 1.52994 * 109.47103 * 239.99533 * 16 15 6 19 19 N 1.31797 * 118.87858 * 0.24502 * 15 6 5 20 20 H 1.08995 * 109.47041 * 300.00026 * 1 2 3 21 21 H 1.09001 * 109.46866 * 59.99958 * 1 2 3 22 22 H 1.08999 * 109.47256 * 179.97438 * 1 2 3 23 23 H 0.96997 * 119.99983 * 180.02562 * 2 1 3 24 24 H 1.08000 * 120.56731 * 180.24555 * 5 4 3 25 25 H 0.96996 * 119.99792 * 355.35197 * 10 9 7 26 26 H 1.08995 * 109.47159 * 359.97438 * 16 15 6 27 27 H 1.08995 * 109.47193 * 60.00080 * 17 16 15 28 28 H 1.09002 * 109.46711 * 180.02562 * 17 16 15 29 29 H 1.08994 * 109.47022 * 299.99726 * 17 16 15 30 30 H 1.08995 * 109.47328 * 59.99995 * 18 16 15 31 31 H 1.09003 * 109.47395 * 180.02562 * 18 16 15 32 32 H 1.09004 * 109.47447 * 299.99952 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1547 1.1946 0.0000 4 7 1.4690 2.3319 0.0005 5 6 2.0856 3.4964 0.0055 6 6 3.4975 3.5203 0.0001 7 6 4.2037 4.7437 0.0005 8 1 5.1784 4.8046 -0.4606 9 6 3.6408 5.8760 0.5984 10 7 4.1224 7.0639 0.3331 11 14 2.2017 5.6930 1.7751 12 1 0.9281 5.7669 1.0149 13 1 2.2906 4.3813 2.4656 14 1 2.2421 6.7853 2.7803 15 6 4.1824 2.2860 -0.0001 16 6 5.6890 2.2456 0.0003 17 6 6.1791 1.5106 1.2496 18 6 6.1798 1.5113 -1.2489 19 7 3.4822 1.1694 -0.0001 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.9500 -0.8400 -0.0004 24 1 1.5208 4.4169 0.0099 25 1 4.9111 7.1541 -0.2242 26 1 6.0797 3.2632 0.0003 27 1 5.7884 0.4931 1.2493 28 1 7.2687 1.4819 1.2501 29 1 5.8294 2.0338 2.1396 30 1 5.8306 2.0348 -2.1388 31 1 7.2694 1.4817 -1.2484 32 1 5.7891 0.4937 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259978429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:51 Heat of formation + Delta-G solvation = 29.104402 kcal Electronic energy + Delta-G solvation = -15193.967856 eV Core-core repulsion = 12767.887898 eV Total energy + Delta-G solvation = -2426.079958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.57397 -35.84769 -34.42334 -33.58462 -31.54935 -30.12036 -26.54194 -26.30809 -23.93934 -23.73154 -21.17211 -19.53366 -18.56752 -17.24408 -15.73883 -14.68358 -14.39210 -14.22386 -13.64359 -13.47686 -13.38372 -13.02062 -12.77792 -12.44278 -12.19563 -11.70123 -11.61212 -10.95427 -10.65702 -10.63651 -10.44312 -10.28126 -10.12253 -9.54141 -9.30224 -9.18313 -8.80557 -7.82631 -7.46631 -7.04615 -4.44935 2.41889 2.56245 3.16387 3.29944 3.46969 3.95778 3.98731 4.62678 5.31076 5.33837 5.52927 5.63689 5.73535 5.90028 6.05502 6.06979 6.14358 6.16171 6.27990 6.42696 6.44199 6.50608 6.71445 6.85921 6.97134 7.07665 7.24682 7.51023 7.91831 8.05482 8.14958 8.32737 8.57279 8.83968 9.67282 10.00290 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.013712 C = 0.009173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.535455 B = 2041.501655 C = 3051.761071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.729 5.729 3 C 0.438 3.562 4 N -0.532 5.532 5 C 0.033 3.967 6 C -0.030 4.030 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.041 3.959 10 N -0.818 5.818 11 Si 1.065 2.935 12 H -0.273 1.273 13 H -0.269 1.269 14 H -0.284 1.284 15 C 0.110 3.890 16 C -0.029 4.029 17 C -0.132 4.132 18 C -0.133 4.133 19 N -0.531 5.531 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.400 0.600 24 H 0.145 0.855 25 H 0.286 0.714 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 -7.813 0.587 7.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.373 5.373 3 C 0.084 3.916 4 N -0.252 5.252 5 C -0.135 4.135 6 C -0.038 4.038 7 C -0.529 4.529 8 H 0.101 0.899 9 C -0.178 4.178 10 N -0.441 5.441 11 Si 0.892 3.108 12 H -0.200 1.200 13 H -0.194 1.194 14 H -0.211 1.211 15 C -0.042 4.042 16 C -0.048 4.048 17 C -0.189 4.189 18 C -0.191 4.191 19 N -0.250 5.250 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.234 0.766 24 H 0.162 0.838 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.360 -7.657 1.465 8.145 hybrid contribution 1.688 -0.229 -1.078 2.016 sum -0.672 -7.886 0.387 7.924 Atomic orbital electron populations 1.21107 0.80146 0.99783 1.01097 1.43023 1.04788 1.03717 1.85735 1.18573 0.84899 0.85949 1.02174 1.67203 1.41648 0.98135 1.18170 1.22812 0.91928 0.93943 1.04791 1.19060 0.93475 0.95006 0.96257 1.20306 1.05320 0.93714 1.33597 0.89914 1.27100 1.02205 0.91299 0.97157 1.70556 1.19440 1.24301 1.29836 0.83692 0.74328 0.76660 0.76163 1.19960 1.19380 1.21133 1.21142 0.94665 0.87193 1.01195 1.19807 0.89632 1.00520 0.94888 1.21696 0.99225 1.00549 0.97476 1.21725 0.99298 1.00670 0.97427 1.66921 1.06567 1.33036 1.18490 0.93751 0.93759 0.92405 0.76633 0.83820 0.90232 0.89246 0.92547 0.93470 0.93153 0.93443 0.93449 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.91 10.65 59.85 0.64 2.54 16 2 N -0.73 -13.52 5.84 -69.11 -0.40 -13.92 16 3 C 0.44 10.11 8.41 -322.73 -2.71 7.40 16 4 N -0.53 -13.02 9.52 -13.35 -0.13 -13.14 16 5 C 0.03 0.83 8.54 -16.45 -0.14 0.69 16 6 C -0.03 -0.76 5.15 -106.51 -0.55 -1.31 16 7 C -0.50 -12.84 8.67 -37.82 -0.33 -13.17 16 8 H 0.08 2.15 6.69 -52.49 -0.35 1.80 16 9 C 0.04 1.06 5.45 -17.34 -0.09 0.96 16 10 N -0.82 -21.37 13.66 55.54 0.76 -20.61 16 11 Si 1.06 24.17 24.89 -169.99 -4.23 19.93 16 12 H -0.27 -5.90 6.46 56.52 0.36 -5.54 16 13 H -0.27 -6.29 6.98 56.52 0.39 -5.89 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.11 2.59 5.55 -81.49 -0.45 2.14 16 16 C -0.03 -0.59 3.07 -91.77 -0.28 -0.87 16 17 C -0.13 -2.33 9.11 37.16 0.34 -1.99 16 18 C -0.13 -2.34 9.10 37.15 0.34 -2.00 16 19 N -0.53 -12.32 10.01 -9.61 -0.10 -12.42 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.40 6.50 8.94 -40.82 -0.36 6.13 16 24 H 0.14 3.52 4.47 -52.49 -0.23 3.29 16 25 H 0.29 7.25 8.73 -40.82 -0.36 6.89 16 26 H 0.09 1.87 5.89 -51.93 -0.31 1.56 16 27 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 LS Contribution 265.99 15.07 4.01 4.01 Total: -1.00 -28.30 265.99 -7.59 -35.89 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.25 Total: 5.88 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -3.24 Total: -5.61 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.13 Total: -60.10 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.23 Total: 19.93 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.30 -7.59 -35.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.990 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds