Wall clock time and date at job start Mon Mar 30 2020 03:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37942 * 119.99722 * 2 1 4 4 N 1.32795 * 118.91389 * 0.02562 * 3 2 1 5 5 C 1.31770 * 121.00961 * 179.74681 * 4 3 2 6 6 C 1.41209 * 118.87116 * 0.47872 * 5 4 3 7 7 C 1.41257 * 120.96908 * 179.78487 * 6 5 4 8 8 H 1.08000 * 119.99397 * 209.28244 * 7 6 5 9 9 C 1.39875 * 120.00245 * 29.28926 * 7 6 5 10 10 N 1.30901 * 119.99812 * 196.30973 * 9 7 6 11 11 Si 1.86794 * 119.99972 * 16.30210 * 9 7 6 12 12 H 1.48507 * 109.47344 * 270.00483 * 11 9 7 13 13 H 1.48500 * 109.47083 * 30.00448 * 11 9 7 14 14 H 1.48497 * 109.47321 * 150.00658 * 11 9 7 15 15 C 1.41165 * 118.05619 * 359.51731 * 6 5 4 16 16 C 1.50707 * 120.56142 * 180.27115 * 15 6 5 17 17 C 1.53008 * 109.46846 * 119.99739 * 16 15 6 18 18 C 1.52994 * 109.47103 * 239.99533 * 16 15 6 19 19 N 1.31797 * 118.87858 * 0.24502 * 15 6 5 20 20 H 1.08995 * 109.47041 * 300.00026 * 1 2 3 21 21 H 1.09001 * 109.46866 * 59.99958 * 1 2 3 22 22 H 1.08999 * 109.47256 * 179.97438 * 1 2 3 23 23 H 0.96997 * 119.99983 * 180.02562 * 2 1 3 24 24 H 1.08000 * 120.56731 * 180.24555 * 5 4 3 25 25 H 0.96996 * 119.99792 * 355.35197 * 10 9 7 26 26 H 1.08995 * 109.47159 * 359.97438 * 16 15 6 27 27 H 1.08995 * 109.47193 * 60.00080 * 17 16 15 28 28 H 1.09002 * 109.46711 * 180.02562 * 17 16 15 29 29 H 1.08994 * 109.47022 * 299.99726 * 17 16 15 30 30 H 1.08995 * 109.47328 * 59.99995 * 18 16 15 31 31 H 1.09003 * 109.47395 * 180.02562 * 18 16 15 32 32 H 1.09004 * 109.47447 * 299.99952 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1547 1.1946 0.0000 4 7 1.4690 2.3319 0.0005 5 6 2.0856 3.4964 0.0055 6 6 3.4975 3.5203 0.0001 7 6 4.2037 4.7437 0.0005 8 1 5.1784 4.8046 -0.4606 9 6 3.6408 5.8760 0.5984 10 7 4.1224 7.0639 0.3331 11 14 2.2017 5.6930 1.7751 12 1 0.9281 5.7669 1.0149 13 1 2.2906 4.3813 2.4656 14 1 2.2421 6.7853 2.7803 15 6 4.1824 2.2860 -0.0001 16 6 5.6890 2.2456 0.0003 17 6 6.1791 1.5106 1.2496 18 6 6.1798 1.5113 -1.2489 19 7 3.4822 1.1694 -0.0001 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.9500 -0.8400 -0.0004 24 1 1.5208 4.4169 0.0099 25 1 4.9111 7.1541 -0.2242 26 1 6.0797 3.2632 0.0003 27 1 5.7884 0.4931 1.2493 28 1 7.2687 1.4819 1.2501 29 1 5.8294 2.0338 2.1396 30 1 5.8306 2.0348 -2.1388 31 1 7.2694 1.4817 -1.2484 32 1 5.7891 0.4937 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259978429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:50 Heat of formation + Delta-G solvation = 12.047886 kcal Electronic energy + Delta-G solvation = -15194.707482 eV Core-core repulsion = 12767.887898 eV Total energy + Delta-G solvation = -2426.819584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41559 -37.49362 -36.15258 -35.34995 -33.33423 -31.93904 -27.95583 -27.88491 -25.73646 -25.43734 -22.98176 -21.20094 -20.45346 -19.00668 -17.48538 -16.38020 -16.04158 -15.97609 -15.46212 -15.11752 -14.98801 -14.67114 -14.37680 -14.22352 -13.71011 -12.98079 -12.90893 -12.76724 -12.36004 -12.18928 -12.14713 -11.93919 -11.89780 -11.36758 -11.12027 -11.00995 -10.57991 -9.71228 -9.35600 -8.86116 -6.40069 0.51969 0.66622 1.33432 1.47290 1.66916 2.11728 2.42336 2.70069 3.45403 3.60335 3.82721 4.11216 4.38149 4.40624 4.46694 4.59449 4.78912 4.84327 4.86443 4.88258 5.00639 5.02924 5.09246 5.24304 5.36438 5.41711 5.50502 5.60493 6.07388 6.19159 6.33515 6.61617 6.73092 6.99654 7.84874 8.04831 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.013712 C = 0.009173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.535455 B = 2041.501655 C = 3051.761071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.718 5.718 3 C 0.440 3.560 4 N -0.549 5.549 5 C 0.023 3.977 6 C -0.058 4.058 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.015 3.985 10 N -0.842 5.842 11 Si 1.093 2.907 12 H -0.258 1.258 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.117 3.883 16 C -0.035 4.035 17 C -0.123 4.123 18 C -0.124 4.124 19 N -0.536 5.536 20 H 0.036 0.964 21 H 0.036 0.964 22 H 0.106 0.894 23 H 0.413 0.587 24 H 0.146 0.854 25 H 0.282 0.718 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -9.936 0.823 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.361 5.361 3 C 0.084 3.916 4 N -0.270 5.270 5 C -0.142 4.142 6 C -0.066 4.066 7 C -0.546 4.546 8 H 0.086 0.914 9 C -0.199 4.199 10 N -0.467 5.467 11 Si 0.917 3.083 12 H -0.184 1.184 13 H -0.208 1.208 14 H -0.198 1.198 15 C -0.036 4.036 16 C -0.055 4.055 17 C -0.181 4.181 18 C -0.182 4.182 19 N -0.256 5.256 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.124 0.876 23 H 0.249 0.751 24 H 0.163 0.837 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.651 -9.800 1.690 10.292 hybrid contribution 1.741 0.182 -1.188 2.115 sum -0.910 -9.618 0.502 9.674 Atomic orbital electron populations 1.21335 0.77973 1.02764 1.00298 1.43272 1.06198 1.02702 1.83972 1.19230 0.85358 0.87144 0.99832 1.67271 1.41683 0.98295 1.19735 1.22914 0.92055 0.94519 1.04755 1.19243 0.93880 0.95656 0.97866 1.20218 1.05117 0.94421 1.34843 0.91360 1.27832 1.03440 0.91032 0.97626 1.70603 1.20153 1.24634 1.31272 0.83301 0.73469 0.76151 0.75417 1.18409 1.20766 1.19799 1.21799 0.96619 0.86794 0.98339 1.19948 0.87384 1.00710 0.97426 1.21633 1.01311 0.99781 0.95390 1.21648 1.01348 0.99856 0.95318 1.67117 1.06631 1.32463 1.19375 0.94524 0.94506 0.87599 0.75118 0.83731 0.90757 0.90611 0.92383 0.90183 0.94557 0.94761 0.90192 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.32 10.65 127.77 1.36 4.68 16 2 N -0.72 -24.58 5.84 -372.55 -2.18 -26.75 16 3 C 0.44 19.57 8.41 261.46 2.20 21.77 16 4 N -0.55 -26.36 9.52 -196.16 -1.87 -28.23 16 5 C 0.02 1.18 8.54 85.43 0.73 1.91 16 6 C -0.06 -2.99 5.15 -21.09 -0.11 -3.10 16 7 C -0.51 -27.19 8.67 23.41 0.20 -26.99 16 8 H 0.07 3.70 6.69 -2.91 -0.02 3.68 16 9 C 0.02 0.78 5.45 85.23 0.46 1.25 16 10 N -0.84 -44.97 13.66 21.82 0.30 -44.67 16 11 Si 1.09 49.16 24.89 68.60 1.71 50.86 16 12 H -0.26 -10.88 6.46 99.48 0.64 -10.24 16 13 H -0.28 -13.15 6.98 99.48 0.69 -12.46 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 15 C 0.12 5.46 5.55 43.29 0.24 5.70 16 16 C -0.04 -1.38 3.07 -11.54 -0.04 -1.41 16 17 C -0.12 -4.10 9.11 71.98 0.66 -3.45 16 18 C -0.12 -4.09 9.10 71.98 0.66 -3.43 16 19 N -0.54 -24.08 10.01 -184.31 -1.85 -25.92 16 20 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.41 12.01 8.94 -92.71 -0.83 11.18 16 24 H 0.15 7.11 4.47 -2.91 -0.01 7.10 16 25 H 0.28 14.75 8.73 -92.71 -0.81 13.94 16 26 H 0.08 3.17 5.89 -2.39 -0.01 3.16 16 27 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 Total: -1.00 -60.52 265.99 2.66 -57.86 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.18 Total: 19.92 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.36 Total: -3.08 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.59 Total: -125.58 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.71 Total: 50.86 kcal Total: -60.52 2.66 -57.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.910 kcal (2) G-P(sol) polarization free energy of solvation -60.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds