Wall clock time and date at job start Mon Mar 30 2020 03:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99989 * 2 1 4 4 N 1.46494 * 109.47023 * 124.99699 * 3 2 1 5 5 C 1.34954 * 126.03475 * 124.99747 * 4 3 2 6 6 C 1.35316 * 107.74368 * 179.73518 * 5 4 3 7 7 C 1.50703 * 126.03429 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.47592 * 340.00121 * 7 6 5 9 9 N 1.46904 * 109.46769 * 220.00089 * 7 6 5 10 10 C 1.53000 * 109.46849 * 100.00392 * 7 6 5 11 11 C 1.50695 * 109.47080 * 184.99746 * 10 7 6 12 12 H 1.08002 * 120.00194 * 359.97438 * 11 10 7 13 13 C 1.37885 * 120.00200 * 180.02562 * 11 10 7 14 14 N 1.31514 * 119.99842 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47217 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47091 * 119.99868 * 15 13 11 18 18 H 1.48495 * 109.47375 * 240.00113 * 15 13 11 19 19 C 1.39868 * 107.92272 * 0.02562 * 6 5 4 20 20 N 1.30837 * 108.20148 * 359.97438 * 19 6 5 21 21 H 1.08003 * 119.99379 * 0.02562 * 1 2 3 22 22 H 1.07990 * 120.00088 * 180.02562 * 1 2 3 23 23 H 1.07993 * 119.99571 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46800 * 4.99501 * 3 2 1 25 25 H 1.09007 * 109.46625 * 244.99822 * 3 2 1 26 26 H 1.07999 * 126.12426 * 359.75442 * 5 4 3 27 27 H 1.00907 * 110.99656 * 176.05215 * 9 7 6 28 28 H 1.00899 * 110.99986 * 300.00382 * 9 7 6 29 29 H 1.09003 * 109.47121 * 304.99835 * 10 7 6 30 30 H 1.09002 * 109.47266 * 64.99837 * 10 7 6 31 31 H 0.96994 * 119.99914 * 180.02562 * 14 13 11 32 32 H 1.08001 * 125.89990 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3235 1.5512 1.0610 6 6 4.8170 1.5009 2.3199 7 6 6.2590 1.6898 2.7150 8 1 6.8983 1.5224 1.8482 9 7 6.6066 0.7308 3.7722 10 6 6.4636 3.1152 3.2320 11 6 7.9268 3.3430 3.5115 12 1 8.6395 2.5503 3.3381 13 6 8.3556 4.5632 3.9895 14 7 7.4876 5.5283 4.2011 15 14 10.1692 4.8453 4.3366 16 1 10.9320 3.6117 4.0177 17 1 10.6656 5.9648 3.4965 18 1 10.3519 5.1840 5.7708 19 6 3.7527 1.2415 3.1894 20 7 2.6592 1.1402 2.4781 21 1 -0.5399 0.9354 -0.0004 22 1 -0.5400 -0.9352 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6214 1.4026 -0.9315 26 1 4.8918 1.7343 0.1610 27 1 7.5854 0.7935 4.0097 28 1 6.0274 0.8656 4.5873 29 1 6.1221 3.8268 2.4803 30 1 5.8924 3.2542 4.1500 31 1 7.7893 6.3868 4.5370 32 1 3.8215 1.1419 4.2626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260099692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:41 Heat of formation + Delta-G solvation = 88.614901 kcal Electronic energy + Delta-G solvation = -14354.282451 eV Core-core repulsion = 11930.783061 eV Total energy + Delta-G solvation = -2423.499390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74020 -35.91031 -34.83550 -32.38694 -31.28043 -29.38781 -27.79553 -26.15776 -23.93323 -21.31303 -20.92480 -20.00319 -19.01339 -16.76738 -16.23698 -15.30091 -14.99366 -14.71129 -14.53781 -13.59579 -13.37026 -13.10484 -12.62112 -12.40624 -12.09954 -11.93698 -11.48701 -11.40982 -11.01803 -10.70107 -10.43564 -9.95429 -9.89903 -9.70083 -9.07038 -8.95579 -8.42615 -8.01124 -7.42721 -6.03070 -4.07095 1.90607 2.34640 3.02823 3.28599 3.36580 3.38900 3.42486 4.42903 4.59774 4.75822 4.97975 5.25729 5.32080 5.37721 5.46807 5.66851 5.77359 6.05854 6.13923 6.33043 6.37097 6.46966 6.78938 6.91585 7.16622 7.43929 7.57633 7.69854 7.93421 8.13044 8.23344 8.31048 8.45234 9.01005 9.57775 11.07569 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.061585 B = 0.005329 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.544897 B = 5252.959219 C = 5390.174774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.164 4.164 3 C 0.166 3.834 4 N -0.381 5.381 5 C 0.040 3.960 6 C -0.193 4.193 7 C 0.163 3.837 8 H 0.069 0.931 9 N -0.840 5.840 10 C 0.001 3.999 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.060 3.940 20 N -0.303 5.303 21 H 0.099 0.901 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.168 0.832 27 H 0.344 0.656 28 H 0.328 0.672 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 -8.448 -7.718 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.044 3.956 4 N -0.164 5.164 5 C -0.105 4.105 6 C -0.204 4.204 7 C 0.051 3.949 8 H 0.087 0.913 9 N -0.367 5.367 10 C -0.038 4.038 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.127 4.127 20 N -0.124 5.124 21 H 0.117 0.883 22 H 0.120 0.880 23 H 0.130 0.870 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.185 0.815 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.946 -9.031 -8.300 16.440 hybrid contribution 2.113 1.419 0.743 2.652 sum -8.833 -7.611 -7.557 13.894 Atomic orbital electron populations 1.23856 0.95617 1.02163 0.99053 1.23012 0.96215 0.98086 1.00965 1.20645 0.91965 0.96560 0.86383 1.48370 1.05675 1.56907 1.05494 1.22203 0.84585 1.03917 0.99767 1.20336 0.97661 1.10776 0.91668 1.19810 0.88039 0.92746 0.94340 0.91294 1.59178 1.09678 1.54646 1.13234 1.19792 0.96503 0.90971 0.96525 1.21254 0.93055 0.98156 1.43704 0.92506 1.25023 0.97471 0.96221 0.95568 1.69988 1.33725 1.03871 1.45503 0.86561 0.85489 0.78227 0.77863 1.19651 1.21090 1.21076 1.23615 0.89824 0.99254 0.99976 1.77231 1.23641 1.24850 0.86722 0.88297 0.88049 0.86977 0.89912 0.88138 0.81492 0.84327 0.86175 0.96509 0.96595 0.93065 0.80719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 14.32 29.01 0.42 -1.12 16 2 C -0.16 -1.73 9.70 -36.02 -0.35 -2.08 16 3 C 0.17 1.87 6.95 -5.19 -0.04 1.83 16 4 N -0.38 -6.01 3.67 -62.54 -0.23 -6.24 16 5 C 0.04 0.66 11.36 -17.22 -0.20 0.46 16 6 C -0.19 -3.67 5.09 -105.05 -0.54 -4.20 16 7 C 0.16 3.37 3.20 -68.86 -0.22 3.15 16 8 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 9 N -0.84 -15.96 9.10 -5.65 -0.05 -16.01 16 10 C 0.00 0.02 4.60 -27.89 -0.13 -0.11 16 11 C -0.52 -14.20 8.55 -34.44 -0.29 -14.50 16 12 H 0.06 1.49 7.14 -52.49 -0.37 1.11 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 C 0.06 1.10 11.40 -17.37 -0.20 0.90 16 20 N -0.30 -5.50 12.41 30.62 0.38 -5.12 16 21 H 0.10 0.81 7.84 -52.48 -0.41 0.40 16 22 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 23 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 24 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 25 H 0.10 0.86 8.07 -51.92 -0.42 0.44 16 26 H 0.17 2.28 8.06 -52.49 -0.42 1.85 16 27 H 0.34 6.63 7.90 -39.29 -0.31 6.32 16 28 H 0.33 5.96 8.19 -39.29 -0.32 5.63 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.18 2.91 7.66 -52.49 -0.40 2.51 16 LS Contribution 281.46 15.07 4.24 4.24 Total: -1.00 -31.67 281.46 -5.90 -37.57 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.32 Total: 9.27 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.64 Total: -14.11 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.84 Total: -53.21 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.67 -5.90 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260099692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.187 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds