Wall clock time and date at job start Mon Mar 30 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99989 * 2 1 4 4 N 1.46494 * 109.47023 * 124.99699 * 3 2 1 5 5 C 1.34954 * 126.03475 * 124.99747 * 4 3 2 6 6 C 1.35316 * 107.74368 * 179.73518 * 5 4 3 7 7 C 1.50703 * 126.03429 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.47592 * 340.00121 * 7 6 5 9 9 N 1.46904 * 109.46769 * 220.00089 * 7 6 5 10 10 C 1.53000 * 109.46849 * 100.00392 * 7 6 5 11 11 C 1.50695 * 109.47080 * 184.99746 * 10 7 6 12 12 H 1.08002 * 120.00194 * 359.97438 * 11 10 7 13 13 C 1.37885 * 120.00200 * 180.02562 * 11 10 7 14 14 N 1.31514 * 119.99842 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47217 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47091 * 119.99868 * 15 13 11 18 18 H 1.48495 * 109.47375 * 240.00113 * 15 13 11 19 19 C 1.39868 * 107.92272 * 0.02562 * 6 5 4 20 20 N 1.30837 * 108.20148 * 359.97438 * 19 6 5 21 21 H 1.08003 * 119.99379 * 0.02562 * 1 2 3 22 22 H 1.07990 * 120.00088 * 180.02562 * 1 2 3 23 23 H 1.07993 * 119.99571 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46800 * 4.99501 * 3 2 1 25 25 H 1.09007 * 109.46625 * 244.99822 * 3 2 1 26 26 H 1.07999 * 126.12426 * 359.75442 * 5 4 3 27 27 H 1.00907 * 110.99656 * 176.05215 * 9 7 6 28 28 H 1.00899 * 110.99986 * 300.00382 * 9 7 6 29 29 H 1.09003 * 109.47121 * 304.99835 * 10 7 6 30 30 H 1.09002 * 109.47266 * 64.99837 * 10 7 6 31 31 H 0.96994 * 119.99914 * 180.02562 * 14 13 11 32 32 H 1.08001 * 125.89990 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3235 1.5512 1.0610 6 6 4.8170 1.5009 2.3199 7 6 6.2590 1.6898 2.7150 8 1 6.8983 1.5224 1.8482 9 7 6.6066 0.7308 3.7722 10 6 6.4636 3.1152 3.2320 11 6 7.9268 3.3430 3.5115 12 1 8.6395 2.5503 3.3381 13 6 8.3556 4.5632 3.9895 14 7 7.4876 5.5283 4.2011 15 14 10.1692 4.8453 4.3366 16 1 10.9320 3.6117 4.0177 17 1 10.6656 5.9648 3.4965 18 1 10.3519 5.1840 5.7708 19 6 3.7527 1.2415 3.1894 20 7 2.6592 1.1402 2.4781 21 1 -0.5399 0.9354 -0.0004 22 1 -0.5400 -0.9352 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6214 1.4026 -0.9315 26 1 4.8918 1.7343 0.1610 27 1 7.5854 0.7935 4.0097 28 1 6.0274 0.8656 4.5873 29 1 6.1221 3.8268 2.4803 30 1 5.8924 3.2542 4.1500 31 1 7.7893 6.3868 4.5370 32 1 3.8215 1.1419 4.2626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260099692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:40 Heat of formation + Delta-G solvation = 66.895709 kcal Electronic energy + Delta-G solvation = -14355.224266 eV Core-core repulsion = 11930.783061 eV Total energy + Delta-G solvation = -2424.441204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.06008 -37.37923 -36.00927 -34.39530 -32.43618 -30.75626 -29.74994 -27.28599 -25.74728 -22.99345 -22.13325 -21.04846 -20.33459 -18.63437 -17.70499 -16.58112 -16.35614 -16.14993 -16.02523 -14.98654 -14.76618 -14.47057 -14.13524 -13.95395 -13.61677 -13.56213 -12.92257 -12.79932 -12.49850 -12.27608 -12.21001 -11.82971 -11.50685 -11.04983 -10.58281 -10.52148 -10.22804 -9.49992 -8.99103 -8.16972 -6.28900 0.99754 1.11637 1.41602 1.42927 1.55379 1.96311 1.98166 2.42908 3.16046 3.64796 3.91039 4.02915 4.13520 4.23542 4.32928 4.59628 4.61688 4.62841 4.92768 4.96238 5.05596 5.25380 5.46387 5.59394 5.63025 5.71384 5.81950 5.83660 6.22071 6.23887 6.52691 6.82034 6.85416 6.89717 7.41077 8.94106 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.061585 B = 0.005329 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.544897 B = 5252.959219 C = 5390.174774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.184 4.184 3 C 0.155 3.845 4 N -0.373 5.373 5 C 0.050 3.950 6 C -0.229 4.229 7 C 0.180 3.820 8 H 0.069 0.931 9 N -0.829 5.829 10 C 0.012 3.988 11 C -0.532 4.532 12 H 0.067 0.933 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.963 3.037 16 H -0.258 1.258 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.047 3.953 20 N -0.322 5.322 21 H 0.109 0.891 22 H 0.115 0.885 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.131 0.869 26 H 0.198 0.802 27 H 0.342 0.658 28 H 0.332 0.668 29 H -0.016 1.016 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -9.274 -8.792 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.203 4.203 3 C 0.036 3.964 4 N -0.156 5.156 5 C -0.096 4.096 6 C -0.240 4.240 7 C 0.068 3.932 8 H 0.087 0.913 9 N -0.356 5.356 10 C -0.027 4.027 11 C -0.571 4.571 12 H 0.085 0.915 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.788 3.212 16 H -0.181 1.181 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.139 4.139 20 N -0.144 5.144 21 H 0.127 0.873 22 H 0.133 0.867 23 H 0.124 0.876 24 H 0.110 0.890 25 H 0.149 0.851 26 H 0.215 0.785 27 H 0.155 0.845 28 H 0.143 0.857 29 H 0.002 0.998 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.757 -9.885 -9.382 17.362 hybrid contribution 1.919 1.661 1.005 2.730 sum -8.838 -8.224 -8.376 14.694 Atomic orbital electron populations 1.24092 0.95228 1.03341 0.96599 1.22941 0.96721 0.97464 1.03180 1.21093 0.92066 0.97346 0.85934 1.48763 1.06086 1.55049 1.05661 1.22653 0.85135 1.01741 1.00057 1.20276 0.96856 1.13787 0.93097 1.19470 0.89559 0.89858 0.94362 0.91315 1.59184 1.09640 1.53535 1.13264 1.19678 0.95251 0.93454 0.94302 1.21660 0.94093 0.98399 1.42898 0.91480 1.25953 1.02254 0.96056 0.95438 1.70132 1.36115 1.04459 1.46787 0.85423 0.79745 0.78472 0.77523 1.18121 1.20907 1.20853 1.23762 0.89924 0.99649 1.00538 1.77164 1.23702 1.25510 0.88047 0.87328 0.86689 0.87594 0.89035 0.85130 0.78485 0.84479 0.85666 0.99772 0.99486 0.93041 0.80194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 14.32 67.77 0.97 -1.47 16 2 C -0.18 -3.53 9.70 25.64 0.25 -3.28 16 3 C 0.15 3.13 6.95 85.64 0.60 3.73 16 4 N -0.37 -11.19 3.67 -351.79 -1.29 -12.48 16 5 C 0.05 1.60 11.36 83.54 0.95 2.55 16 6 C -0.23 -8.62 5.09 -20.14 -0.10 -8.72 16 7 C 0.18 7.45 3.20 44.17 0.14 7.59 16 8 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 9 N -0.83 -31.18 9.10 -171.80 -1.56 -32.74 16 10 C 0.01 0.63 4.60 29.85 0.14 0.76 16 11 C -0.53 -28.98 8.55 25.60 0.22 -28.76 16 12 H 0.07 3.44 7.14 -2.91 -0.02 3.42 16 13 C 0.00 0.04 5.46 84.66 0.46 0.50 16 14 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 15 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 C 0.05 1.73 11.40 85.24 0.97 2.70 16 20 N -0.32 -11.50 12.41 -57.02 -0.71 -12.21 16 21 H 0.11 1.50 7.84 -2.91 -0.02 1.47 16 22 H 0.11 1.49 8.06 -2.92 -0.02 1.47 16 23 H 0.11 2.16 8.06 -2.91 -0.02 2.13 16 24 H 0.09 1.72 7.79 -2.39 -0.02 1.70 16 25 H 0.13 1.82 8.07 -2.38 -0.02 1.80 16 26 H 0.20 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.34 12.96 7.90 -89.69 -0.71 12.25 16 28 H 0.33 12.10 8.19 -89.69 -0.73 11.36 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.18 6.13 7.66 -2.91 -0.02 6.11 16 Total: -1.00 -67.98 281.46 3.02 -64.97 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.33 Total: 27.76 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 4.59 Total: -24.41 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.28 Total: -113.84 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -67.98 3.02 -64.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260099692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.861 kcal (2) G-P(sol) polarization free energy of solvation -67.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds