Wall clock time and date at job start Mon Mar 30 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99598 * 2 1 4 4 N 1.46507 * 109.47257 * 125.00010 * 3 2 1 5 5 C 1.34945 * 126.03625 * 125.25648 * 4 3 2 6 6 C 1.35315 * 107.74749 * 180.15103 * 5 4 3 7 7 C 1.50699 * 126.04372 * 179.87655 * 6 5 4 8 8 H 1.09002 * 109.46983 * 359.71248 * 7 6 5 9 9 C 1.50697 * 109.47147 * 119.71470 * 7 6 5 10 10 H 1.07996 * 120.00256 * 5.26987 * 9 7 6 11 11 C 1.37876 * 119.99754 * 185.27049 * 9 7 6 12 12 N 1.31516 * 119.99834 * 196.78452 * 11 9 7 13 13 Si 1.86798 * 120.00215 * 16.78683 * 11 9 7 14 14 H 1.48501 * 109.47297 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.47110 * 59.99854 * 13 11 9 16 16 H 1.48499 * 109.46912 * 300.00052 * 13 11 9 17 17 C 1.52999 * 109.46767 * 239.71225 * 7 6 5 18 18 N 1.46905 * 109.46968 * 65.80467 * 17 7 6 19 19 C 1.39872 * 107.91571 * 359.61108 * 6 5 4 20 20 N 1.30837 * 108.20454 * 0.24046 * 19 6 5 21 21 H 1.07996 * 119.99459 * 180.02562 * 1 2 3 22 22 H 1.07997 * 119.99918 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.00406 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47803 * 5.00139 * 3 2 1 25 25 H 1.09002 * 109.47417 * 244.99865 * 3 2 1 26 26 H 1.08004 * 126.13063 * 0.02562 * 5 4 3 27 27 H 0.97000 * 119.99997 * 354.12379 * 12 11 9 28 28 H 1.09006 * 109.46872 * 185.80096 * 17 7 6 29 29 H 1.09000 * 109.47600 * 305.79910 * 17 7 6 30 30 H 1.00896 * 110.99903 * 56.04484 * 18 17 7 31 31 H 1.00905 * 110.99726 * 179.97438 * 18 17 7 32 32 H 1.07999 * 125.90080 * 180.25989 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 4.3226 1.5562 1.0615 6 6 4.8181 1.4949 2.3192 7 6 6.2602 1.6823 2.7142 8 1 6.8590 1.8731 1.8236 9 6 6.3748 2.8525 3.6568 10 1 5.4842 3.3520 4.0084 11 6 7.6168 3.2856 4.0702 12 7 7.7240 4.0668 5.1228 13 14 9.1472 2.7628 3.1354 14 1 10.3468 3.3587 3.7767 15 1 9.0532 3.2323 1.7297 16 1 9.2583 1.2821 3.1563 17 6 6.7674 0.4168 3.4084 18 7 6.7863 -0.6945 2.4478 19 6 3.7541 1.2328 3.1885 20 7 2.6600 1.1350 2.4776 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8501 -0.9353 0.0004 24 1 1.3586 2.1317 0.0896 25 1 2.6213 1.4027 -0.9314 26 1 4.8896 1.7480 0.1625 27 1 6.9264 4.4076 5.5571 28 1 7.7758 0.5884 3.7853 29 1 6.1066 0.1681 4.2388 30 1 7.3410 -0.4627 1.6375 31 1 7.1183 -1.5425 2.8824 32 1 3.8235 1.1293 4.2612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260145453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:53 Heat of formation + Delta-G solvation = 72.707884 kcal Electronic energy + Delta-G solvation = -14743.077030 eV Core-core repulsion = 12318.887860 eV Total energy + Delta-G solvation = -2424.189170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92444 -37.33708 -35.98096 -34.34370 -32.53466 -31.82252 -29.29008 -26.79423 -25.01944 -23.04452 -22.05274 -20.97651 -20.35761 -19.44379 -17.69843 -16.39921 -16.22942 -16.12271 -15.90811 -15.15341 -15.05239 -14.70020 -14.34516 -13.88936 -13.50741 -13.36481 -12.88915 -12.69924 -12.38075 -12.14362 -11.90379 -11.77598 -11.23912 -11.01734 -10.50227 -10.37806 -10.10438 -9.33921 -9.06822 -8.55389 -6.28241 1.07583 1.19013 1.47099 1.56723 1.74956 2.05161 2.18218 2.54026 3.12641 3.73710 3.94167 4.01781 4.13159 4.19356 4.36927 4.58861 4.61390 4.72566 4.91020 4.95432 5.02380 5.21219 5.33184 5.60626 5.66335 5.74876 5.91815 6.09511 6.12081 6.40855 6.46384 6.64955 6.84514 6.95082 7.50560 8.71269 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043395 B = 0.007246 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.076784 B = 3863.536361 C = 4063.604748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.182 4.182 3 C 0.157 3.843 4 N -0.374 5.374 5 C 0.035 3.965 6 C -0.181 4.181 7 C 0.096 3.904 8 H 0.031 0.969 9 C -0.584 4.584 10 H 0.012 0.988 11 C -0.025 4.025 12 N -0.944 5.944 13 Si 1.090 2.910 14 H -0.296 1.296 15 H -0.260 1.260 16 H -0.245 1.245 17 C 0.072 3.928 18 N -0.844 5.844 19 C 0.036 3.964 20 N -0.326 5.326 21 H 0.115 0.885 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.089 0.911 25 H 0.130 0.870 26 H 0.195 0.805 27 H 0.249 0.751 28 H 0.018 0.982 29 H 0.043 0.957 30 H 0.340 0.660 31 H 0.340 0.660 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 -9.105 -13.493 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.200 4.200 3 C 0.038 3.962 4 N -0.159 5.159 5 C -0.110 4.110 6 C -0.192 4.192 7 C 0.075 3.925 8 H 0.049 0.951 9 C -0.622 4.622 10 H 0.030 0.970 11 C -0.222 4.222 12 N -0.581 5.581 13 Si 0.912 3.088 14 H -0.223 1.223 15 H -0.185 1.185 16 H -0.169 1.169 17 C -0.059 4.059 18 N -0.374 5.374 19 C -0.149 4.149 20 N -0.149 5.149 21 H 0.133 0.867 22 H 0.126 0.874 23 H 0.122 0.878 24 H 0.107 0.893 25 H 0.148 0.852 26 H 0.212 0.788 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.435 -9.101 -13.621 17.990 hybrid contribution 0.011 0.540 1.028 1.162 sum -7.424 -8.561 -12.593 16.940 Atomic orbital electron populations 1.24070 0.95200 1.03271 0.96985 1.22951 0.96714 0.97537 1.02840 1.21035 0.92014 0.97130 0.86042 1.48645 1.06241 1.55655 1.05325 1.22569 0.84953 1.03554 0.99885 1.20106 0.97028 1.09965 0.92123 1.17331 0.88984 0.91720 0.94440 0.95055 1.22159 0.93092 1.16298 1.30694 0.96978 1.27278 1.04971 0.95109 0.94793 1.70986 1.31895 1.36840 1.18403 0.83523 0.71731 0.77961 0.75633 1.22311 1.18506 1.16929 1.22094 0.97761 0.91470 0.94558 1.58755 1.62162 1.05740 1.10726 1.23540 0.90780 1.00829 0.99744 1.77081 1.23586 1.25880 0.88329 0.86730 0.87351 0.87751 0.89330 0.85204 0.78804 0.94195 0.96392 0.93860 0.84744 0.84785 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 14.32 67.77 0.97 -1.84 16 2 C -0.18 -3.93 9.70 25.64 0.25 -3.68 16 3 C 0.16 3.58 6.95 85.63 0.59 4.17 16 4 N -0.37 -12.58 3.67 -351.78 -1.29 -13.87 16 5 C 0.03 1.24 11.34 83.54 0.95 2.18 16 6 C -0.18 -7.75 4.50 -20.14 -0.09 -7.85 16 7 C 0.10 4.38 1.85 -12.29 -0.02 4.36 16 8 H 0.03 1.37 6.80 -2.39 -0.02 1.35 16 9 C -0.58 -32.96 8.70 25.60 0.22 -32.74 16 10 H 0.01 0.76 7.93 -2.91 -0.02 0.74 16 11 C -0.02 -1.41 5.31 84.65 0.45 -0.96 16 12 N -0.94 -59.43 13.69 21.45 0.29 -59.14 16 13 Si 1.09 48.44 26.28 68.60 1.80 50.24 16 14 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 16 H -0.24 -9.48 5.68 99.48 0.56 -8.92 16 17 C 0.07 3.01 5.79 86.30 0.50 3.51 16 18 N -0.84 -27.84 9.36 -186.70 -1.75 -29.59 16 19 C 0.04 1.57 11.37 85.24 0.97 2.54 16 20 N -0.33 -13.25 12.41 -57.02 -0.71 -13.96 16 21 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 22 H 0.11 1.70 7.84 -2.91 -0.02 1.68 16 23 H 0.10 2.41 8.06 -2.91 -0.02 2.39 16 24 H 0.09 1.86 7.79 -2.39 -0.02 1.84 16 25 H 0.13 2.08 8.07 -2.39 -0.02 2.06 16 26 H 0.20 5.33 8.06 -2.91 -0.02 5.30 16 27 H 0.25 16.06 8.73 -92.71 -0.81 15.25 16 28 H 0.02 0.78 4.74 -2.38 -0.01 0.77 16 29 H 0.04 1.93 7.86 -2.39 -0.02 1.91 16 30 H 0.34 9.98 8.99 -89.70 -0.81 9.17 16 31 H 0.34 9.54 9.08 -89.69 -0.81 8.72 16 32 H 0.16 7.06 8.06 -2.91 -0.02 7.03 16 Total: -1.00 -70.79 275.18 2.46 -68.32 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.68 Total: 28.30 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 4.79 Total: -30.31 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -3.45 Total: -116.55 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.80 Total: 50.24 kcal Total: -70.79 2.46 -68.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.030 kcal (2) G-P(sol) polarization free energy of solvation -70.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds