Wall clock time and date at job start Mon Mar 30 2020 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39040 * 120.00233 * 2 1 4 4 C 1.39478 * 120.15938 * 181.06742 * 3 2 1 5 5 C 1.38559 * 117.90693 * 180.23863 * 4 3 2 6 6 C 1.38824 * 118.03734 * 359.51628 * 5 4 3 7 7 N 1.31788 * 120.01210 * 0.23341 * 6 5 4 8 8 N 1.28343 * 122.28760 * 0.02562 * 7 6 5 9 9 C 1.46504 * 119.99550 * 180.02562 * 2 1 3 10 10 C 1.53005 * 109.46742 * 245.04662 * 9 2 1 11 11 C 1.53000 * 109.47117 * 5.04607 * 9 2 1 12 12 C 1.50702 * 109.46747 * 125.04937 * 9 2 1 13 13 H 1.07998 * 120.00360 * 357.81148 * 12 9 2 14 14 C 1.37881 * 119.99386 * 177.81018 * 12 9 2 15 15 N 1.31511 * 120.00153 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99515 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47497 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47147 * 119.99908 * 16 14 12 19 19 H 1.48505 * 109.47248 * 239.99772 * 16 14 12 20 20 H 1.09003 * 109.46908 * 95.07071 * 1 2 3 21 21 H 1.08999 * 109.47373 * 215.07515 * 1 2 3 22 22 H 1.09000 * 109.46916 * 335.08021 * 1 2 3 23 23 H 1.07998 * 121.04808 * 0.03280 * 4 3 2 24 24 H 1.08001 * 120.98287 * 179.79261 * 5 4 3 25 25 H 1.07999 * 119.99164 * 180.25158 * 6 5 4 26 26 H 1.08993 * 109.46829 * 54.34368 * 10 9 2 27 27 H 1.09002 * 109.46579 * 174.33892 * 10 9 2 28 28 H 1.09001 * 109.46956 * 294.34250 * 10 9 2 29 29 H 1.09001 * 109.47285 * 60.00390 * 11 9 2 30 30 H 1.09000 * 109.46545 * 179.97438 * 11 9 2 31 31 H 1.09000 * 109.47543 * 300.00188 * 11 9 2 32 32 H 0.96998 * 119.99810 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1603 1.2041 0.0000 4 6 3.5549 1.2080 -0.0225 5 6 4.2001 2.4342 -0.0164 6 6 3.4197 3.5822 0.0014 7 7 2.1054 3.4856 0.0165 8 7 1.5012 2.3533 0.0160 9 6 2.1975 -1.2688 -0.0006 10 6 2.9795 -1.4068 1.3073 11 6 1.2080 -2.4288 -0.1280 12 6 3.1552 -1.2953 -1.1638 13 1 3.1875 -0.4668 -1.8557 14 6 3.9903 -2.3775 -1.3445 15 7 3.9513 -3.3862 -0.5016 16 14 5.1770 -2.4108 -2.7867 17 1 5.0254 -1.1655 -3.5814 18 1 6.5694 -2.5087 -2.2799 19 1 4.8793 -3.5849 -3.6459 20 1 -0.3633 -0.0908 -1.0237 21 1 -0.3634 -0.8410 0.5905 22 1 -0.3633 0.9320 0.4330 23 1 4.1143 0.2844 -0.0406 24 1 5.2783 2.4951 -0.0296 25 1 3.8897 4.5545 0.0025 26 1 2.3001 -1.2870 2.1511 27 1 3.4430 -2.3923 1.3511 28 1 3.7523 -0.6393 1.3512 29 1 0.6509 -2.3305 -1.0597 30 1 1.7530 -3.3727 -0.1288 31 1 0.5152 -2.4096 0.7133 32 1 4.5391 -4.1473 -0.6286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149954.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:55 Heat of formation + Delta-G solvation = 74.008950 kcal Electronic energy + Delta-G solvation = -15625.249833 eV Core-core repulsion = 13201.117081 eV Total energy + Delta-G solvation = -2424.132751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.14881 -37.38467 -33.51729 -32.23937 -31.14489 -29.66058 -26.78059 -25.57411 -24.75350 -23.43415 -22.37920 -19.22463 -17.23437 -16.56827 -15.79638 -15.53637 -14.76808 -14.39975 -13.84513 -13.43944 -13.26105 -12.63344 -12.18879 -11.89970 -11.44797 -11.29037 -11.15609 -10.95646 -10.78611 -10.64664 -10.36328 -10.22850 -10.08088 -9.75724 -9.35417 -9.07240 -8.76737 -8.57269 -6.83831 -6.24080 -4.35558 1.70370 2.03178 3.13775 3.23744 3.28369 3.80315 4.23284 4.51030 4.99529 5.15262 5.40449 5.52381 5.67791 5.94249 6.00424 6.17037 6.33622 6.42594 6.47098 6.58360 6.64814 6.76018 6.80587 6.94337 7.08822 7.27352 7.40756 7.57498 7.73862 7.98618 8.17112 8.34817 8.69948 9.30612 9.67814 10.74878 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.012110 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.461046 B = 2311.544402 C = 2931.553480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.576 5.576 3 C 0.359 3.641 4 C -0.157 4.157 5 C -0.109 4.109 6 C -0.041 4.041 7 N -0.223 5.223 8 N -0.339 5.339 9 C 0.290 3.710 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.525 4.525 13 H 0.063 0.937 14 C 0.071 3.929 15 N -0.881 5.881 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.282 1.282 20 H 0.042 0.958 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.179 0.821 24 H 0.135 0.865 25 H 0.153 0.847 26 H 0.013 0.987 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.021 0.979 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 3.825 1.599 4.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.287 5.287 3 C 0.117 3.883 4 C -0.190 4.190 5 C -0.137 4.137 6 C -0.212 4.212 7 N -0.063 5.063 8 N -0.193 5.193 9 C 0.208 3.792 10 C -0.212 4.212 11 C -0.195 4.195 12 C -0.563 4.563 13 H 0.081 0.919 14 C -0.133 4.133 15 N -0.519 5.519 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 H 0.060 0.940 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.196 0.804 24 H 0.152 0.848 25 H 0.170 0.830 26 H 0.033 0.967 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.040 0.960 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.504 4.158 1.654 4.721 hybrid contribution 2.138 -0.800 -0.893 2.451 sum 0.633 3.358 0.760 3.501 Atomic orbital electron populations 1.21547 0.80809 1.02010 1.00672 1.47189 1.04849 1.02940 1.73703 1.20006 0.90065 0.88348 0.89878 1.22842 0.94441 1.00968 1.00749 1.22120 1.01171 0.92736 0.97722 1.23641 0.92333 0.99234 1.06018 1.72533 1.09511 1.17181 1.07103 1.72799 1.31011 0.93564 1.21878 1.18357 0.89218 0.77354 0.94277 1.22348 0.99097 1.04239 0.95491 1.22028 0.97764 1.01981 0.97749 1.21405 1.19824 1.04640 1.10478 0.91884 1.24840 0.96987 0.95084 0.96342 1.69798 1.38523 1.07686 1.35863 0.86460 0.80605 0.78345 0.82304 1.19649 1.20697 1.20759 0.93988 0.91820 0.91285 0.80401 0.84756 0.82961 0.96744 0.88460 0.94250 0.94462 0.88712 0.96018 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 9.55 59.85 0.57 2.31 16 2 N -0.58 -12.47 2.91 -167.86 -0.49 -12.96 16 3 C 0.36 7.88 6.94 -154.77 -1.07 6.81 16 4 C -0.16 -3.24 7.19 -39.00 -0.28 -3.52 16 5 C -0.11 -1.90 10.20 -39.25 -0.40 -2.30 16 6 C -0.04 -0.70 11.31 -17.35 -0.20 -0.90 16 7 N -0.22 -4.57 11.49 30.57 0.35 -4.21 16 8 N -0.34 -7.43 10.21 31.23 0.32 -7.11 16 9 C 0.29 6.57 0.77 -132.97 -0.10 6.47 16 10 C -0.15 -3.40 8.04 37.16 0.30 -3.11 16 11 C -0.14 -2.97 7.19 37.16 0.27 -2.70 16 12 C -0.53 -12.89 5.59 -34.44 -0.19 -13.08 16 13 H 0.06 1.64 6.91 -52.49 -0.36 1.28 16 14 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 15 N -0.88 -21.81 9.42 55.43 0.52 -21.29 16 16 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 1.08 6.07 -51.93 -0.32 0.77 16 22 H 0.07 1.25 7.22 -51.93 -0.38 0.88 16 23 H 0.18 3.89 4.08 -52.49 -0.21 3.68 16 24 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 25 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 2.30 6.09 -51.93 -0.32 1.98 16 28 H 0.04 0.86 5.37 -51.93 -0.28 0.58 16 29 H 0.04 0.79 7.89 -51.93 -0.41 0.38 16 30 H 0.09 2.22 6.25 -51.93 -0.32 1.90 16 31 H 0.02 0.41 6.70 -51.93 -0.35 0.07 16 32 H 0.26 6.31 8.31 -40.82 -0.34 5.98 16 LS Contribution 254.11 15.07 3.83 3.83 Total: -1.00 -26.55 254.11 -5.46 -32.01 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.77 Total: 3.53 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.20 Total: -8.38 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.70 Total: -45.57 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.55 -5.46 -32.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149954.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.016 kcal (2) G-P(sol) polarization free energy of solvation -26.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds