Wall clock time and date at job start Mon Mar 30 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 H 1.07995 * 119.99926 * 359.97438 * 3 2 1 5 5 C 1.37881 * 120.00035 * 180.02562 * 3 2 1 6 6 N 1.31511 * 120.00331 * 180.02562 * 5 3 2 7 7 Si 1.86799 * 119.99699 * 359.97438 * 5 3 2 8 8 H 1.48503 * 109.47106 * 90.00445 * 7 5 3 9 9 H 1.48507 * 109.47318 * 210.00451 * 7 5 3 10 10 H 1.48498 * 109.47369 * 330.00621 * 7 5 3 11 11 N 1.46899 * 109.47069 * 120.00162 * 2 1 3 12 12 C 1.46909 * 110.99737 * 299.99622 * 11 2 1 13 13 C 1.52998 * 117.49736 * 223.62343 * 12 11 2 14 14 C 1.52996 * 60.00007 * 252.51086 * 13 12 11 15 15 C 1.50698 * 109.47073 * 239.99878 * 2 1 3 16 16 C 1.39874 * 126.04031 * 240.00173 * 15 2 1 17 17 N 1.30836 * 108.20052 * 179.73886 * 16 15 2 18 18 N 1.40084 * 108.20904 * 0.40640 * 17 16 15 19 19 H 0.97001 * 126.04219 * 179.85882 * 18 17 16 20 20 C 1.34947 * 107.92164 * 359.58781 * 18 17 16 21 21 H 1.08997 * 109.47643 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47054 * 300.00109 * 1 2 3 23 23 H 1.09000 * 109.47169 * 59.99785 * 1 2 3 24 24 H 0.96996 * 120.00379 * 179.97438 * 6 5 3 25 25 H 1.00896 * 111.00372 * 63.94961 * 11 2 1 26 26 H 1.08992 * 115.54816 * 9.33213 * 12 11 2 27 27 H 1.08999 * 117.49969 * 359.97438 * 13 12 11 28 28 H 1.08994 * 117.50122 * 145.02185 * 13 12 11 29 29 H 1.09003 * 117.50279 * 252.51102 * 14 13 12 30 30 H 1.09007 * 117.50275 * 107.49073 * 14 13 12 31 31 H 1.08001 * 125.89534 * 0.02562 * 16 15 2 32 32 H 1.08007 * 126.12498 * 180.26712 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3306 2.2417 -0.0004 5 6 3.3880 1.6727 -0.0005 6 7 3.8264 2.9126 0.0000 7 14 4.6017 0.2528 -0.0005 8 1 4.9230 -0.1238 -1.4006 9 1 5.8453 0.6646 0.6991 10 1 4.0020 -0.9111 0.6999 11 7 2.0196 -0.6925 1.1994 12 6 1.5486 -0.0263 2.4211 13 6 2.5583 0.1675 3.5541 14 6 1.4444 -0.8722 3.6917 15 6 2.0323 -0.7104 -1.2304 16 6 2.8398 -1.8524 -1.2494 17 7 3.0613 -2.1756 -2.4977 18 7 2.4087 -1.2427 -3.3138 19 1 2.4044 -1.2373 -4.2838 20 6 1.7819 -0.3563 -2.5122 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.7800 3.0898 0.0000 25 1 1.7502 -1.6648 1.1910 26 1 0.8019 0.7537 2.2731 27 1 3.5719 -0.1997 3.3933 28 1 2.4761 1.0753 4.1518 29 1 0.6292 -0.6485 4.3798 30 1 1.7252 -1.9231 3.6212 31 1 3.2118 -2.3793 -0.3831 32 1 1.1867 0.4848 -2.8358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260259808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:22 Heat of formation + Delta-G solvation = 123.793846 kcal Electronic energy + Delta-G solvation = -15730.449633 eV Core-core repulsion = 13308.475717 eV Total energy + Delta-G solvation = -2421.973916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54305 -37.45793 -34.61004 -31.77854 -30.66969 -29.10200 -27.41875 -25.26738 -22.16473 -21.67034 -20.91098 -19.78396 -18.78968 -17.21333 -16.31537 -15.03713 -14.61336 -14.51287 -13.75117 -13.47463 -13.14855 -12.51109 -12.33248 -11.95320 -11.91333 -11.71794 -10.91503 -10.83811 -10.56948 -10.35197 -9.93508 -9.90467 -9.58113 -9.46948 -9.04060 -8.78972 -8.41059 -7.58526 -6.83021 -5.93129 -4.02212 2.61879 3.55826 3.62314 3.66340 3.75170 3.96386 4.62412 4.81395 4.95750 5.44359 5.65561 5.66729 5.74912 5.78649 6.11213 6.15442 6.17085 6.28718 6.35998 6.44935 6.53061 6.65886 6.70476 6.81984 7.03068 7.11081 7.34267 7.74380 7.95303 8.08171 8.32320 8.48188 8.69340 9.04321 9.75645 11.15586 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.014850 C = 0.012595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.982901 B = 1885.098250 C = 2222.590431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.275 3.725 3 C -0.507 4.507 4 H 0.069 0.931 5 C 0.096 3.904 6 N -0.902 5.902 7 Si 0.869 3.131 8 H -0.298 1.298 9 H -0.318 1.318 10 H -0.193 1.193 11 N -0.644 5.644 12 C 0.067 3.933 13 C -0.174 4.174 14 C -0.217 4.217 15 C -0.190 4.190 16 C 0.046 3.954 17 N -0.317 5.317 18 N -0.491 5.491 19 H 0.430 0.570 20 C 0.061 3.939 21 H 0.030 0.970 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.260 0.740 25 H 0.312 0.688 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 -7.654 0.043 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.185 3.815 3 C -0.544 4.544 4 H 0.087 0.913 5 C -0.108 4.108 6 N -0.539 5.539 7 Si 0.699 3.301 8 H -0.226 1.226 9 H -0.247 1.247 10 H -0.115 1.115 11 N -0.274 5.274 12 C -0.044 4.044 13 C -0.212 4.212 14 C -0.255 4.255 15 C -0.201 4.201 16 C -0.140 4.140 17 N -0.141 5.141 18 N -0.200 5.200 19 H 0.272 0.728 20 C -0.085 4.085 21 H 0.049 0.951 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.195 0.805 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.160 -8.049 -0.722 9.089 hybrid contribution -0.318 0.031 0.000 0.320 sum -4.479 -8.018 -0.721 9.212 Atomic orbital electron populations 1.22361 0.98735 0.98855 1.01208 1.17278 0.88739 0.92914 0.82576 1.20625 0.92508 0.88421 1.52885 0.91275 1.24878 0.98724 0.95370 0.91802 1.69959 1.14412 1.19776 1.49763 0.87296 0.78291 0.86810 0.77730 1.22586 1.24745 1.11462 1.61245 1.61085 1.03857 1.01234 1.21985 0.98892 0.98737 0.84786 1.22936 0.95581 0.99133 1.03591 1.23262 1.02152 0.96934 1.03176 1.20455 1.05802 0.98168 0.95723 1.23832 0.98491 0.97025 0.94633 1.77112 1.20041 1.14386 1.02513 1.46145 1.42269 1.23129 1.08462 0.72822 1.22126 0.99609 0.95622 0.91135 0.95111 0.93154 0.93190 0.93116 0.86956 0.87973 0.89336 0.89812 0.89963 0.89652 0.80478 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.16 37.16 0.30 -2.50 16 2 C 0.27 5.80 0.45 -133.91 -0.06 5.74 16 3 C -0.51 -13.20 7.51 -34.44 -0.26 -13.46 16 4 H 0.07 1.98 7.99 -52.49 -0.42 1.56 16 5 C 0.10 2.72 5.45 -17.82 -0.10 2.63 16 6 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 7 Si 0.87 22.40 23.22 -169.99 -3.95 18.45 16 8 H -0.30 -8.17 7.00 56.52 0.40 -7.77 16 9 H -0.32 -8.72 7.11 56.52 0.40 -8.32 16 10 H -0.19 -4.43 3.95 56.52 0.22 -4.20 16 11 N -0.64 -12.72 2.59 -95.38 -0.25 -12.97 16 12 C 0.07 1.26 4.95 -67.71 -0.34 0.92 16 13 C -0.17 -3.18 10.46 -26.73 -0.28 -3.46 16 14 C -0.22 -3.37 10.33 -26.73 -0.28 -3.64 16 15 C -0.19 -3.91 2.95 -105.05 -0.31 -4.22 16 16 C 0.05 0.94 8.03 -17.36 -0.14 0.80 16 17 N -0.32 -6.34 12.70 30.63 0.39 -5.95 16 18 N -0.49 -8.58 7.36 30.45 0.22 -8.36 16 19 H 0.43 5.73 8.96 -182.61 -1.64 4.09 16 20 C 0.06 1.15 11.40 -17.22 -0.20 0.95 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.91 6.31 -51.93 -0.33 0.59 16 23 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 25 H 0.31 5.51 8.06 -39.29 -0.32 5.19 16 26 H 0.10 2.05 6.03 -51.93 -0.31 1.74 16 27 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.18 3.34 6.68 -52.49 -0.35 2.99 16 32 H 0.17 2.86 8.06 -52.48 -0.42 2.44 16 LS Contribution 256.68 15.07 3.87 3.87 Total: -1.00 -31.70 256.68 -6.22 -37.92 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.64 Total: 10.09 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.65 Total: -16.24 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 1.14 Total: -54.09 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -3.95 Total: 18.45 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.70 -6.22 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260259808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.718 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds