Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 H 1.07995 * 119.99926 * 359.97438 * 3 2 1 5 5 C 1.37881 * 120.00035 * 180.02562 * 3 2 1 6 6 N 1.31511 * 120.00331 * 180.02562 * 5 3 2 7 7 Si 1.86799 * 119.99699 * 359.97438 * 5 3 2 8 8 H 1.48503 * 109.47106 * 90.00445 * 7 5 3 9 9 H 1.48507 * 109.47318 * 210.00451 * 7 5 3 10 10 H 1.48498 * 109.47369 * 330.00621 * 7 5 3 11 11 N 1.46899 * 109.47069 * 120.00162 * 2 1 3 12 12 C 1.46909 * 110.99737 * 299.99622 * 11 2 1 13 13 C 1.52998 * 117.49736 * 223.62343 * 12 11 2 14 14 C 1.52996 * 60.00007 * 252.51086 * 13 12 11 15 15 C 1.50698 * 109.47073 * 239.99878 * 2 1 3 16 16 C 1.39874 * 126.04031 * 240.00173 * 15 2 1 17 17 N 1.30836 * 108.20052 * 179.73886 * 16 15 2 18 18 N 1.40084 * 108.20904 * 0.40640 * 17 16 15 19 19 H 0.97001 * 126.04219 * 179.85882 * 18 17 16 20 20 C 1.34947 * 107.92164 * 359.58781 * 18 17 16 21 21 H 1.08997 * 109.47643 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47054 * 300.00109 * 1 2 3 23 23 H 1.09000 * 109.47169 * 59.99785 * 1 2 3 24 24 H 0.96996 * 120.00379 * 179.97438 * 6 5 3 25 25 H 1.00896 * 111.00372 * 63.94961 * 11 2 1 26 26 H 1.08992 * 115.54816 * 9.33213 * 12 11 2 27 27 H 1.08999 * 117.49969 * 359.97438 * 13 12 11 28 28 H 1.08994 * 117.50122 * 145.02185 * 13 12 11 29 29 H 1.09003 * 117.50279 * 252.51102 * 14 13 12 30 30 H 1.09007 * 117.50275 * 107.49073 * 14 13 12 31 31 H 1.08001 * 125.89534 * 0.02562 * 16 15 2 32 32 H 1.08007 * 126.12498 * 180.26712 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3306 2.2417 -0.0004 5 6 3.3880 1.6727 -0.0005 6 7 3.8264 2.9126 0.0000 7 14 4.6017 0.2528 -0.0005 8 1 4.9230 -0.1238 -1.4006 9 1 5.8453 0.6646 0.6991 10 1 4.0020 -0.9111 0.6999 11 7 2.0196 -0.6925 1.1994 12 6 1.5486 -0.0263 2.4211 13 6 2.5583 0.1675 3.5541 14 6 1.4444 -0.8722 3.6917 15 6 2.0323 -0.7104 -1.2304 16 6 2.8398 -1.8524 -1.2494 17 7 3.0613 -2.1756 -2.4977 18 7 2.4087 -1.2427 -3.3138 19 1 2.4044 -1.2373 -4.2838 20 6 1.7819 -0.3563 -2.5122 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.7800 3.0898 0.0000 25 1 1.7502 -1.6648 1.1910 26 1 0.8019 0.7537 2.2731 27 1 3.5719 -0.1997 3.3933 28 1 2.4761 1.0753 4.1518 29 1 0.6292 -0.6485 4.3798 30 1 1.7252 -1.9231 3.6212 31 1 3.2118 -2.3793 -0.3831 32 1 1.1867 0.4848 -2.8358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260259808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = 100.586767 kcal Electronic energy + Delta-G solvation = -15731.455967 eV Core-core repulsion = 13308.475717 eV Total energy + Delta-G solvation = -2422.980251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05842 -38.98044 -36.17978 -33.86150 -32.17479 -30.62902 -28.96032 -27.25185 -23.71767 -22.99615 -22.47772 -21.30003 -20.48405 -18.79125 -18.17496 -16.79198 -16.18887 -16.05049 -15.27393 -15.17427 -14.93857 -14.15749 -13.93102 -13.68521 -13.41671 -13.27069 -12.78663 -12.25906 -12.18535 -12.01860 -11.84359 -11.67858 -11.16980 -10.95100 -10.80020 -10.59477 -10.30618 -9.15638 -8.42958 -8.13128 -6.20130 1.09892 1.57429 1.63444 1.89340 2.05849 2.23294 2.69249 3.20249 3.28538 3.59605 4.12975 4.31850 4.33489 4.41496 4.62794 4.69439 4.81480 4.84362 4.90915 4.94304 5.08966 5.18504 5.26095 5.46478 5.49030 5.59349 5.70927 5.93963 6.21805 6.59722 6.64941 6.82455 6.92028 7.14647 7.60314 8.99057 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.014850 C = 0.012595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.982901 B = 1885.098250 C = 2222.590431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.279 3.721 3 C -0.481 4.481 4 H 0.033 0.967 5 C 0.047 3.953 6 N -0.955 5.955 7 Si 0.915 3.085 8 H -0.318 1.318 9 H -0.347 1.347 10 H -0.146 1.146 11 N -0.651 5.651 12 C 0.042 3.958 13 C -0.195 4.195 14 C -0.171 4.171 15 C -0.216 4.216 16 C 0.040 3.960 17 N -0.331 5.331 18 N -0.476 5.476 19 H 0.448 0.552 20 C 0.064 3.936 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.252 0.748 25 H 0.331 0.669 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.190 0.810 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 -10.104 0.334 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.189 3.811 3 C -0.519 4.519 4 H 0.051 0.949 5 C -0.152 4.152 6 N -0.596 5.596 7 Si 0.747 3.253 8 H -0.247 1.247 9 H -0.279 1.279 10 H -0.067 1.067 11 N -0.283 5.283 12 C -0.069 4.069 13 C -0.233 4.233 14 C -0.209 4.209 15 C -0.228 4.228 16 C -0.146 4.146 17 N -0.155 5.155 18 N -0.187 5.187 19 H 0.293 0.707 20 C -0.083 4.083 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.151 0.849 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.207 0.793 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.434 -10.543 -0.442 11.869 hybrid contribution -0.041 0.834 -0.135 0.846 sum -5.475 -9.709 -0.577 11.161 Atomic orbital electron populations 1.22250 0.96642 1.00378 1.01176 1.17067 0.90371 0.90125 0.83558 1.20880 0.91152 0.90527 1.49375 0.94850 1.25490 1.00527 0.96485 0.92649 1.70101 1.14021 1.21788 1.53647 0.86742 0.75596 0.86501 0.76440 1.24745 1.27875 1.06681 1.60860 1.61545 1.04898 1.00966 1.21964 0.99275 1.00138 0.85511 1.22978 0.95718 1.00713 1.03913 1.23297 1.00626 0.96935 1.00085 1.20441 1.07271 0.99204 0.95898 1.24006 0.98363 0.97035 0.95174 1.77072 1.20537 1.15191 1.02726 1.46172 1.41001 1.22077 1.09410 0.70653 1.22454 0.99058 0.95725 0.91071 0.92697 0.93403 0.93140 0.93922 0.84888 0.89633 0.90502 0.89957 0.87668 0.87758 0.79284 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 8.16 71.98 0.59 -4.41 16 2 C 0.28 11.25 0.45 2.03 0.00 11.25 16 3 C -0.48 -25.12 7.51 25.60 0.19 -24.93 16 4 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 5 C 0.05 2.66 5.45 84.66 0.46 3.13 16 6 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 7 Si 0.91 46.56 23.22 68.60 1.59 48.15 16 8 H -0.32 -17.15 7.00 99.48 0.70 -16.45 16 9 H -0.35 -19.19 7.11 99.48 0.71 -18.48 16 10 H -0.15 -6.30 3.95 99.48 0.39 -5.91 16 11 N -0.65 -23.95 2.59 -455.68 -1.18 -25.13 16 12 C 0.04 1.48 4.95 44.91 0.22 1.70 16 13 C -0.19 -6.77 10.46 30.59 0.32 -6.45 16 14 C -0.17 -4.64 10.33 30.59 0.32 -4.32 16 15 C -0.22 -8.38 2.95 -20.14 -0.06 -8.44 16 16 C 0.04 1.49 8.03 85.24 0.68 2.17 16 17 N -0.33 -12.34 12.70 -57.02 -0.72 -13.06 16 18 N -0.48 -15.34 7.36 -57.59 -0.42 -15.76 16 19 H 0.45 10.68 8.96 -213.33 -1.91 8.77 16 20 C 0.06 2.27 11.40 83.54 0.95 3.22 16 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.05 1.65 6.31 -2.39 -0.02 1.64 16 23 H 0.05 1.70 8.00 -2.39 -0.02 1.68 16 24 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.33 10.32 8.06 -89.70 -0.72 9.60 16 26 H 0.09 3.34 6.03 -2.39 -0.01 3.32 16 27 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.19 6.43 6.68 -2.91 -0.02 6.41 16 32 H 0.19 5.85 8.06 -2.91 -0.02 5.83 16 Total: -1.00 -69.08 256.68 1.42 -67.66 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -1.82 Total: 25.28 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 3.68 Total: -27.07 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -2.03 Total: -114.02 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.59 Total: 48.15 kcal Total: -69.08 1.42 -67.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260259808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.243 kcal (2) G-P(sol) polarization free energy of solvation -69.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds